Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00038 ATGGCGTCTGTTAACATAGAAGACAAGAAAGCAGACGACGAAGCTCCTGTCCAAGCAAGTCGAGAGACTAAGGATGAAGATACTTCCCAAGCCCAGATTTCGGGGAAAGAAGTCACTGCTGTACCTGGTAAACAGGAAGGTTCTAGTGCAGAGGGTGGTACTGAAGAGGTAAATGGTGATGCCAAAGCCGACGACCAGAAAGGTGACCCGGAAATTAAGGGAGTAGGTGAGGAACAGGGCACTGCTGCGAATGACGAAGTTGAGGAAACTAATTCTGACAACAAAGGGGAAGGTAGTGGAGAGGAGGAAGACGAAGGTGACAACGAGGTTGAAACTGAAGGCGAAGGTGAACGGGAAGAAAGGGAGGTACCGAAGAAGGGATCAAAGACAGATGCAAAGAAGGATAAAAAGGTGTCTGCGAAATCAATTAAAAATTCTGTAGAGAAGAAAGGTAAAAAAGATTCTAGTTTGAAGGAGCCGGTTACGCCGACCATTGAGAGGCCAGCTAGGGAGAGAAAGACAGTTGAGCGGTATTCTGTGCCATCGCCTGGCAGGTTTGGAAAGTCTTCTGCAGGCAAAGCTCTCTCAATTGAAAAGGGCCGTGGCACTACGCTCAAGGATATTCCAAATGTGGCATTCAAATTGTCAAAGAGAAAAGCTGACGACAATCTGCAACTACTTCATACAATTCTGTTTGGAAAGAAAGCAAAGGCTCAAACCTTGAAAAGGAATATAAGCCAGTTTTCAGGTTATATTTGGGTTGAGAATGAGGAAAAACAAAGGTCGAAGGTAAAAGAGAAGATTGATAAGTGTGTCAAAGAAAAATTGGTGGATTTTTGTGATGTGCTAAATATTCCAATAAACAAAGCCACTGTAAAGAAGGAGGAGCTCTCAGCAAAGTTATTAGAATTTTTGGAGTCACCACATGCTACAACTGATGTTTTGTTGGCTGACAAGAAGCAGAAAGTCAAAAAGCGACGGAGGTCCAGTTCAGGCAAGGCAGTTGGTTCTGGAGAATCTACAGAAGTGCCTGCTAAGAAACAAAAATCTCAGCCTACAAAGAAGAGAAAACATACCTCGGATGTTGAGGAAGAAGAAGAGGATGATAAAGTTGAAGCCTCAAACGAAAAGGATGTTTCTCAAGATAAGGAAGATGACGATGATGATGAAACTGGCTCAAAAGAAGAAATCGATGAAAAGGATAAATCAGATGAGGATGATAAGACACCCGAGAAAATGCCTAGTCCAAAGAAGCCATCTAAGAAGGCTGGAAAAGATTCTGGGTCTAAATCTGTTGAAAAATCTTCTTCTACAAAGAAAGTGACTGTAAAATCTGCTAAAGAAGTTGCGAAATCTGCTAAAGAATTTGCAAAACCAACTAAAAAATCATCTAATTCGGCTTCAAAAAAGGATGCTGTCAAATCTGTTGCCTCACCATCAAAGCCAAAGGGCTCATCAAAAAAGCAAAATGTCGATGAAAAGAAGCCTCTAAAGGAAAAATCTTCAGGAAAGAAACAGACAAGCAAAGCCCCTGCAAAGATTTCGGTAGAAGAACAAGGCAAGGGAAAGAGTAGCAAGAAAGCTAAGAAAGAACCCAGCAGAGAGGAGATGCATGAAGTTGTAGTTAATATTCTGAAGCAAGTTGATTTCAATACTGCAACTTTGTCCGACATTCTCAGGCAACTTGGTACCCACTTTGGTGTGGATTTAATGCATAGGAAAGCAGAGGTGAAGGATATTATAACAGATGTGATAAATAACATGAGTGATGAAGAAGAGGAGGCTGATGATGATGGTGGTGATGATACGGACAAAGACGAGGATAAGGATGAGGATGCTTAA 1842 41.8 MASVNIEDKKADDEAPVQASRETKDEDTSQAQISGKEVTAVPGKQEGSSAEGGTEEVNGDAKADDQKGDPEIKGVGEEQGTAANDEVEETNSDNKGEGSGEEEDEGDNEVETEGEGEREEREVPKKGSKTDAKKDKKVSAKSIKNSVEKKGKKDSSLKEPVTPTIERPARERKTVERYSVPSPGRFGKSSAGKALSIEKGRGTTLKDIPNVAFKLSKRKADDNLQLLHTILFGKKAKAQTLKRNISQFSGYIWVENEEKQRSKVKEKIDKCVKEKLVDFCDVLNIPINKATVKKEELSAKLLEFLESPHATTDVLLADKKQKVKKRRRSSSGKAVGSGESTEVPAKKQKSQPTKKRKHTSDVEEEEEDDKVEASNEKDVSQDKEDDDDDETGSKEEIDEKDKSDEDDKTPEKMPSPKKPSKKAGKDSGSKSVEKSSSTKKVTVKSAKEVAKSAKEFAKPTKKSSNSASKKDAVKSVASPSKPKGSSKKQNVDEKKPLKEKSSGKKQTSKAPAKISVEEQGKGKSSKKAKKEPSREEMHEVVVNILKQVDFNTATLSDILRQLGTHFGVDLMHRKAEVKDIITDVINNMSDEEEEADDDGGDDTDKDEDKDEDA* 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 229341 234264 - CsaV3_1G000380.1 Csa01g00038 514535

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00038 613 Coils Coil 254 274 - -
Csa01g00038 613 MobiDBLite consensus disorder prediction 317 537 - -
Csa01g00038 613 MobiDBLite consensus disorder prediction 117 178 - -
Csa01g00038 613 MobiDBLite consensus disorder prediction 1 198 - -
Csa01g00038 613 MobiDBLite consensus disorder prediction 57 74 - -
Csa01g00038 613 MobiDBLite consensus disorder prediction 586 613 - -
Csa01g00038 613 MobiDBLite consensus disorder prediction 98 116 - -
Csa01g00038 613 MobiDBLite consensus disorder prediction 469 485 - -
Csa01g00038 613 MobiDBLite consensus disorder prediction 440 468 - -
Csa01g00038 613 MobiDBLite consensus disorder prediction 1 31 - -
Csa01g00038 613 MobiDBLite consensus disorder prediction 519 537 - -
Csa01g00038 613 PANTHER DEK PROTEIN 87 611 IPR044198 GO:0003677|GO:0006325
Csa01g00038 613 SUPERFAMILY DEK C-terminal domain 525 586 - -
Csa01g00038 613 MobiDBLite consensus disorder prediction 486 506 - -
Csa01g00038 613 MobiDBLite consensus disorder prediction 333 347 - -
Csa01g00038 613 Gene3D - 524 587 - -
Csa01g00038 613 MobiDBLite consensus disorder prediction 395 433 - -
Csa01g00038 613 PANTHER OS01G0924900 PROTEIN 87 611 - -
Csa01g00038 613 Pfam DEK C terminal domain 532 584 IPR014876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00038 K17046 DEK; protein DEK - csv:101211154 869.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00038 Csa-Chr1:229341 Csa03g00407 Csa-Chr3:3463020 9.59E-60 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g70 . . Bda06g00718 Bda15g00682 Bpe12g00471 . . Bma12g01088 . . Cma10g00046 Cma11g00021 Car10g00035 Car11g00020 Sed12g2525 . Cpe04g01627 Bhi02g00660 Tan09g2398 Cmetu02g1444 . Hepe09g0033 . . Cla06g01759 Cam06g1951 Cec06g2000 Cco06g2006 Clacu06g1908 Cmu06g1848 Cre06g2662 . . Cone13ag0236 Cone19ag0222 . . . . . Blo15g00199 . . Bpe07g00898 . . Bma08g00267 . Cmo10g00041 Cmo11g00021 . . . . . Cpe18g00919 . . . . . . . . . . . . . . Lsi06g01657 Csa01g00038 Chy02g02681 Cme02g02085
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009134 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00038 Csa_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0