Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00039 ATGGAAGCCTCACTACGGGAACCGAGTTATAGACGAGCTCCAGATGAACCAGACCTCGATCTATACACAATTCCAAGCCACTCCAGTTGGTTTTCGTGGGACGATATTCACGAAACAGAGAAATTAGCTTTGAAGGAGTTTTTTGATGGAAGCTCAATATCAAGAACTCCGCGTATATATAAGGAATATAGAGATTTTATTATCAATAAGTACAGGGAAGAGCCTTCCAGCAGGCTTACATTCACCGAAATTCGGAAATCTCTGGTGGGCGATGTTAACTTGCTTCATAAGGTGTTTGCTTTTTTGGAGACATGGGGGCTGATCAACTTTGGTGCAACTTCTGATGACGATGATTTGGCGGAGGTGGAAGATGGCGAGAGTTCTGTAATTAAGATTGAAGAGGGGGTTCCCAATGGAATTCGTGTGGGAGCAATGCCAAATTCGGTCAAGCCAATTTCAGCACCACCTGTTGTGGAAGACAGTGTGATCGTTAATGGGAGCGGGTTTAAATTACCTCCTTTGACTTCTTATTCAGATGTTTTCGGTGACTTGTTGAAACAGAAGATTTTAGTGTGTGGGAACTGTGGCCAACTTTGTGGATCTAGATACCATCAATGCGCCAAGGATGATTATTCAATCTGCGAAAATTGTTTCAAGGATGGAAAATATGGGGAGAAGAGGCTCTTGGAAGATTTTGAGTTGAAGACCACCGAGTTCACTGAAGATAGAAGCAGTACAGGAGCTGTGTGGACTGAGGCCGAGACTCTGCTTCTTTTGGAATCTGTTTTGAAGCATGGAGATGATTGGGAACTTGTTGCTCAAAATGTTCAAACCAAGACTAAATTGGATTGTATATTGAAGTTCGTAGAGTTGCCGTTTGGGGACTCCTTGTTATGTTCTGAAACTCAAAGGAACGAGGTTAGTGGTCCTAATAACAACGTTACTAGTGAGAAAGAAACTACAGACGGTCCACCAGAAACTACAGAGGCTCCACCTAACAAGCAAGAGATTGCCGGAAGTGAAGACCAATGTACCAAGGACATAAACGAGGACGAAGATGGAGAGAACCAAGGGCCTCCCAAGCGACAATGCACTGCTTCTATTCAAGATACGAGCAGTTCTCTAATGAAACAGGTAGCTTTGATATCAAGCATGGTCGGACCACAAATTATGGCGGCAGCTTCTACTGCTTCTGTTACAGCACTTTGTGACGAAAACTCATATCCAAAAGAAATATTTGATGATCAAAACTTCTTTGTTACTAATGGACTGTGTTCTGCGGCTTCCACCACATCAAATCACGAGGTTGAGAGGATTCTCAATAACGAAGATTCAGTCGCTAAGGAAAGGCCTCAATCAGGTGATATAATGGCCGAAGACAAAGATGACATAGCTTTAATCTTACGAGTTAGAGCTGCAATTGCAACAGCACTTGGCGCTGCTGCAGCACATGCAAAATTACTTGCTGATCAAGAAGAGAGAGAAATGGAATATTTATTGGGAATAATGATAGAAACACAGATGAAGAAGATGCAGCGCAAAATCAAGCATTTTGAAGACCTGGAGCTGATTATGGAAACAGAATATCCTGTGATTGAGGAACTAGAAGATGAACTGTTGATGGAGCGGGTTAGTGTGTTGCAATCTGCATTTGATCTCGGTATACCTAGGTGGAAGGATTATCCTTCTGTGAGATCTTGA 1701 42.62 MEASLREPSYRRAPDEPDLDLYTIPSHSSWFSWDDIHETEKLALKEFFDGSSISRTPRIYKEYRDFIINKYREEPSSRLTFTEIRKSLVGDVNLLHKVFAFLETWGLINFGATSDDDDLAEVEDGESSVIKIEEGVPNGIRVGAMPNSVKPISAPPVVEDSVIVNGSGFKLPPLTSYSDVFGDLLKQKILVCGNCGQLCGSRYHQCAKDDYSICENCFKDGKYGEKRLLEDFELKTTEFTEDRSSTGAVWTEAETLLLLESVLKHGDDWELVAQNVQTKTKLDCILKFVELPFGDSLLCSETQRNEVSGPNNNVTSEKETTDGPPETTEAPPNKQEIAGSEDQCTKDINEDEDGENQGPPKRQCTASIQDTSSSLMKQVALISSMVGPQIMAAASTASVTALCDENSYPKEIFDDQNFFVTNGLCSAASTTSNHEVERILNNEDSVAKERPQSGDIMAEDKDDIALILRVRAAIATALGAAAAHAKLLADQEEREMEYLLGIMIETQMKKMQRKIKHFEDLELIMETEYPVIEELEDELLMERVSVLQSAFDLGIPRWKDYPSVRS* 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 237441 240113 + CsaV3_1G000390.1 Csa01g00039 514536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00039 566 Gene3D - 28 114 IPR036388 -
Csa01g00039 566 PANTHER SWI/SNF COMPLEX-RELATED 21 563 - -
Csa01g00039 566 CDD SANT 250 291 IPR001005 -
Csa01g00039 566 ProSiteProfiles SWIRM domain profile. 22 119 IPR007526 GO:0005515
Csa01g00039 566 MobiDBLite consensus disorder prediction 340 358 - -
Csa01g00039 566 SUPERFAMILY Homeodomain-like 244 295 IPR009057 -
Csa01g00039 566 ProSiteProfiles SANT domain profile. 245 296 IPR017884 -
Csa01g00039 566 PANTHER BRAHMA ASSOCIATED PROTEIN 155 KDA 21 563 - -
Csa01g00039 566 Pfam Myb-like DNA-binding domain 250 289 IPR001005 -
Csa01g00039 566 SMART sant 246 294 IPR001005 -
Csa01g00039 566 MobiDBLite consensus disorder prediction 303 366 - -
Csa01g00039 566 Pfam SWIRM-associated region 1 476 549 IPR032451 -
Csa01g00039 566 Gene3D - 245 296 - -
Csa01g00039 566 SUPERFAMILY Homeodomain-like 21 114 IPR009057 -
Csa01g00039 566 MobiDBLite consensus disorder prediction 303 321 - -
Csa01g00039 566 ProSiteProfiles Myb-like domain profile. 250 292 IPR001005 -
Csa01g00039 566 Pfam SWIRM domain 25 110 IPR007526 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00039 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101222310 1108.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00039 Csa-Chr1:237441 Csa04g02742 Csa-Chr4:26313563 1.04E-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g72 . . . Bda15g00681 Bpe12g00472 . . . . . Cma10g00047 . Car10g00036 . Sed01g2393 . . Bhi02g00661 Tan09g2396 Cmetu07g1239 . . . . Cla06g01758 Cam06g1950 Cec06g1999 Cco06g2005 Clacu06g1907 Cmu06g1847 Cre06g2661 . . . Cone19ag0221 . . . . . . . . . . . Bma08g00266 . Cmo10g00042 . . . . . . Cpe18g00918 . . . . . . . . . . . . . . Lsi06g01656 Csa01g00039 Chy02g02680 Cme02g02083
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009523 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00039 Csa_Chr01 FPKM 1.108659 2.070912 0.25664 0.378901 1.682082 3.180255 2.689017 3.648369 4.317655 3.23238