Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00043 ATGGGAGAGGAAGACAGGAAACCGGAAGATACAAAACTAGAGGAACCGCCGAAAGCGGCTCCTGATCAAGAGAAAACAGAAGGTGAGAGCGAGAAGAAGGAATCAAAAGATGTGATAGAAGAAAAGCCTCTTCCTAAACCACCTCAGGATATTGTGCTCTCTGTCTTTATGCATTGTGAAGGCTGTGCCCGCAAAGTCCGCCGCTGCCTCAGAGGCTTTGAGGGTGTTGAAAGCGTGGAGACTGATTGTAGAACTCACAAAGTTGTGGTGAAAGGAGAGAAAGCCGATCCGGTCAAGGTTTTAAACAGACTTCAGAGGAAAAGCCACCGACGGGTTGAATTGATCTCTCCAATTCCCGAGCCCGAGCCCATTGCTCCAGTCCCTGAACCTGTAGAGAAACTCAAAACAGAGGACCCTAAACCACAGCCTCAGATTATTGTAACTGTCGTCTTGAAAGTGCACATGCATTGCGAGGCTTGTGCTCAAGAAATCAAAAGAAGGATACACAGAATGAAAGGTGTTGAATCGGTGGACCCAGATCTAAAAAGCTCACAAGTCTCTGTGAAAGGAGCGTTCGATCCGGCGGCGCTGGTTGCCTATGTCCACCGCCGGACGGGAAAACACGCCGCGATTGTGAAGCAAGAGCCGGAAGTTACGCCGGAGAATAATGAATCAGAAGTCGTTGCTGTGAAAGAAGCCGAAGAAGAGAAGAAAGCCGACGCCGGTGACGGAGTTGAAAGTGAGAAAAAGGTGGAGGAAGAGAGTGTAGTCGAGGAGAAACCCGCGGCTGCTCCCCCAGGCGACGGGGAGGCAGAAGAAGCGGCCCCTGGCGACGCCGGCCAAGCAGCAGCAGAAGAAGGCCCGAAAATGGTGGAAGTGAAGAAGAATGAATACCATTATTACCCGCAAAGGTACATTATGGAAATGTATCCGTATGCACCGCCAGTGATCGGCGACACATCGTACCCACCGCCACAGATGGCTGTGGAGACGTACCCGCCGCCGGTGATGATGGGGCATGCATATCCACCTCAGATGTTCAGCGATGAAAATCCAAATGCTTGTTCGATCATGTAA 1077 50.97 MGEEDRKPEDTKLEEPPKAAPDQEKTEGESEKKESKDVIEEKPLPKPPQDIVLSVFMHCEGCARKVRRCLRGFEGVESVETDCRTHKVVVKGEKADPVKVLNRLQRKSHRRVELISPIPEPEPIAPVPEPVEKLKTEDPKPQPQIIVTVVLKVHMHCEACAQEIKRRIHRMKGVESVDPDLKSSQVSVKGAFDPAALVAYVHRRTGKHAAIVKQEPEVTPENNESEVVAVKEAEEEKKADAGDGVESEKKVEEESVVEEKPAAAPPGDGEAEEAAPGDAGQAAAEEGPKMVEVKKNEYHYYPQRYIMEMYPYAPPVIGDTSYPPPQMAVETYPPPVMMGHAYPPQMFSDENPNACSIM* 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 252445 255087 - CsaV3_1G000430.1 Csa01g00043 514540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00043 358 SUPERFAMILY HMA, heavy metal-associated domain 53 106 IPR036163 GO:0046872
Csa01g00043 358 MobiDBLite consensus disorder prediction 233 259 - -
Csa01g00043 358 MobiDBLite consensus disorder prediction 1 47 - -
Csa01g00043 358 SUPERFAMILY HMA, heavy metal-associated domain 146 209 IPR036163 GO:0046872
Csa01g00043 358 Gene3D - 144 211 - -
Csa01g00043 358 MobiDBLite consensus disorder prediction 233 290 - -
Csa01g00043 358 Gene3D - 46 120 - -
Csa01g00043 358 CDD HMA 57 113 IPR006121 GO:0046872
Csa01g00043 358 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 358 - -
Csa01g00043 358 MobiDBLite consensus disorder prediction 1 44 - -
Csa01g00043 358 ProSiteProfiles Heavy-metal-associated domain profile. 155 188 IPR006121 GO:0046872
Csa01g00043 358 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 358 IPR044577 GO:0046872
Csa01g00043 358 Pfam Heavy-metal-associated domain 151 207 IPR006121 GO:0046872
Csa01g00043 358 Pfam Heavy-metal-associated domain 53 107 IPR006121 GO:0046872
Csa01g00043 358 ProSiteProfiles Heavy-metal-associated domain profile. 57 90 IPR006121 GO:0046872
Csa01g00043 358 CDD HMA 150 210 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00043 - - - csv:101211886 597.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00978 Csa01g00043 CCT
Csa01g00043 Csa01g00978 ECH
Csa01g00978 Csa01g00043 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00043 Csa-Chr1:252445 Csa01g01343 Csa-Chr1:8753540 8.53E-07 dispersed
Csa01g00043 Csa-Chr1:252445 Csa01g00978 Csa-Chr1:6067074 1.92E-91 wgd
Csa01g00043 Csa-Chr1:252445 Csa06g00807 Csa-Chr6:6476056 1.52E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g83 . Blo16g00277 . . . . Bma06g00269 . Cmo13g00848 Cmo18g00228 Cma10g00050 Cma11g00024 Car10g00039 Car11g00024 Sed08g0021 Cpe20g00298 Cpe04g01624 Bhi02g00667 Tan09g2388 Cmetu02g1739 . Hepe09g0037 . . Cla06g01754 Cam06g1946 Cec06g1996 Cco06g2001 Clacu06g1903 Cmu06g1843 Cre06g2656 . Cone16ag0007 Cone13ag0233 Cone19ag0219 Lsi02g00515 Csa01g00978 Chy12g01155 Cme12g01577 . . Bda11g01590 Bda14g01351 . Bpe15g00226 Bma03g01247 . Sed08g2424 . Cmo11g00025 Cma13g00818 Cma18g00308 Car13g00662 Car18g00239 Cpe09g00951 Cpe18g00916 Bhi08g01515 Tan05g2989 Cmetu12g1119 Lac10g0597 Hepe07g2121 . . Cla03g00367 Cam03g0386 Cec03g0372 Cco03g0387 Clacu03g0385 Cmu03g0990 Cre03g0682 Lsi06g01653 Csa01g00043 Chy02g02675 Cme02g02079
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001843 2 2 2 2 2 2 4 2 2 2 2 2 4 2 2 3 2 1 4 2 2 2 1 2 2 2 2 3 3 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00043 Csa_Chr01 FPKM 35.860466 42.780334 47.586418 46.770428 35.157772 31.592079 33.085648 66.281189 65.434052 65.270607