Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00048 ATGACTAGTCAAGGTGGTTCTTCTAGAAGAAGTTTGTCCTTAACGAACATGTCGTCTCAGGGCAAGAAGAAAGCCCATGAGAACGGAAACTCGGATGCACCGCGGAAGTCTCTTTCATCATCTCGTTCATTACAACTCACTGGTGAGCGAACGGTAAAACGACTGCGGCTATCAAGAGCACTGACAGTTCCTGAAAGTACTACCATCTCTGAGGCTTGTCGTCGGATGGCTGCTCGTAGAGTTGACGCTTTGTTACTGACTGATTCAAATGCTTTACTTTGTGGTATCCTCACAGACAAGGATATAGCAACAAGGGTTATTGCTTGTGGCATTAATCTCGAAGAAACATCTGTGTCTAAAGTTATGACAAGGAATCCAGTTTTTGTTCTTTCTGACACCCTAGCCGTGGAAGCCCTCCAGAAGATGGTACAAGGAAAATTTAGACATTTGCCTGTAGTTGAGAACGGGGAGGTCATTGCATTACTTGATATTGCAAAATGTTTATATGATGCTATTGCACGAATGGAAAGAGCAGCTGAAAAGGGAAAGGCCATTGCAGCAGCAGTTGAAGGTGTTGAAAAAAGTTGGGGAACCTCTGTATCTGGTCCTAATACGTTTATTGAGACACTTCGAGAGCGTATGTTCAGACCATCTCTGTCTACTATAATCCCAGAGAATTTAAAGATTGTTACAGTTCCACCAACAGAAACAGTTTTGATGGCCACAAAAAAGATGCTTGAACTTCGAGTGAGTTCTGCAGTTGTAACAGTTGATAGCAAGCCACAAGGAATTCTCACGTCAAAGGATATTTTGATGCGATTAATAGCTCAAAATCTTCCTCCAGATTCCACACTTGTAGAGAAGGTCATGACCCCAAATCCTGAATGTGCATCAATTGATACACCAATAGTTGACGCTCTGCACACTATGCACGATGGAAAGTTTTTGCATCTCCCAGTGGTAGATAGAGATGGAAACGTTGTTGCTGTAGTTGATGTAATACATATCACCCATGCTGCTGTGGCCACGGTTGGAAATACATCTGGAGTTGGCAACGAGGCTGCAAGTTCTATGATGCAGAAGTTTTGGGATTCTGCCATGGCCTTATCACCAAATGACGATGACGATGAATTGCGTAGTGAAGGTTCAATGAAATTGGCTTCTGAGGAAACGGATACCTTAAGAACTCTTCCCTTTCCATCACCTGGAATGTCAAATACTTTTTCTTTTAAACTTGAAGATAGGAGGGGCCGGATGCATCGGTTTTCTTGTGATACTCGGAGTTTAACAGATGTCATAACAGCAATCCTTCAGAGAGTTGGTGATGATATTGACCGCAACAAATTGCCTCAGATTTTGTATGAAGATGAAGACCACGATAAAGTTGTTCTAGGATCAGACAGCGATCTTGCAGCAGCTGTAGAGCACGCAAGGTTGGCTGGATGGAAGGGACTGAGATTGCATTTAGAATATCCAGGAAGTCATGGTCGTAGAAGGGATGCAGGAAATATGGATTATGCTCAAAGAGACGCATGGGCGTCGGCGTACAGTGCAGTTGCGGCCGGAGCCGCCCTTGTTGCTGGGTTAGGCGTGTTAGCATACTTGAGAAGATCTGGTTTTGCAGCTCCATAA 1632 43.87 MTSQGGSSRRSLSLTNMSSQGKKKAHENGNSDAPRKSLSSSRSLQLTGERTVKRLRLSRALTVPESTTISEACRRMAARRVDALLLTDSNALLCGILTDKDIATRVIACGINLEETSVSKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKSWGTSVSGPNTFIETLRERMFRPSLSTIIPENLKIVTVPPTETVLMATKKMLELRVSSAVVTVDSKPQGILTSKDILMRLIAQNLPPDSTLVEKVMTPNPECASIDTPIVDALHTMHDGKFLHLPVVDRDGNVVAVVDVIHITHAAVATVGNTSGVGNEAASSMMQKFWDSAMALSPNDDDDELRSEGSMKLASEETDTLRTLPFPSPGMSNTFSFKLEDRRGRMHRFSCDTRSLTDVITAILQRVGDDIDRNKLPQILYEDEDHDKVVLGSDSDLAAAVEHARLAGWKGLRLHLEYPGSHGRRRDAGNMDYAQRDAWASAYSAVAAGAALVAGLGVLAYLRRSGFAAP* 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 276299 282471 + CsaV3_1G000480.1 Csa01g00048 514545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00048 543 SUPERFAMILY CBS-domain pair 49 166 IPR046342 -
Csa01g00048 543 CDD CBS_pair_MUG70_2 228 342 - -
Csa01g00048 543 ProSiteProfiles CBS domain profile. 290 348 IPR000644 -
Csa01g00048 543 ProSiteProfiles CBS domain profile. 122 180 IPR000644 -
Csa01g00048 543 ProSiteProfiles CBS domain profile. 56 115 IPR000644 -
Csa01g00048 543 ProSiteProfiles CBS domain profile. 222 283 IPR000644 -
Csa01g00048 543 Gene3D - 408 489 - -
Csa01g00048 543 ProSiteProfiles PB1 domain profile. 405 492 IPR000270 GO:0005515
Csa01g00048 543 MobiDBLite consensus disorder prediction 1 45 - -
Csa01g00048 543 MobiDBLite consensus disorder prediction 1 24 - -
Csa01g00048 543 CDD CBS_pair_MUG70_1 57 173 - -
Csa01g00048 543 Gene3D - 25 187 IPR046342 -
Csa01g00048 543 Gene3D - 206 350 IPR046342 -
Csa01g00048 543 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 19 527 - -
Csa01g00048 543 SUPERFAMILY CBS-domain pair 228 340 IPR046342 -
Csa01g00048 543 SUPERFAMILY CAD & PB1 domains 400 494 - -
Csa01g00048 543 SMART cbs_1 228 275 IPR000644 -
Csa01g00048 543 SMART cbs_1 59 107 IPR000644 -
Csa01g00048 543 SMART cbs_1 293 341 IPR000644 -
Csa01g00048 543 SMART cbs_1 125 169 IPR000644 -
Csa01g00048 543 SMART PB1_new 407 492 IPR000270 GO:0005515
Csa01g00048 543 Pfam CBS domain 59 104 IPR000644 -
Csa01g00048 543 Pfam CBS domain 118 162 IPR000644 -
Csa01g00048 543 Pfam CBS domain 286 339 IPR000644 -
Csa01g00048 543 Pfam CBS domain 228 274 IPR000644 -
Csa01g00048 543 Pfam PB1 domain 407 490 IPR000270 GO:0005515
Csa01g00048 543 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 19 527 IPR034896 -
Csa01g00048 543 CDD PB1_MUG70 408 492 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00048 - - - csv:101212621 952.584
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00048 Csa-Chr1:276299 Csa04g02054 Csa-Chr4:20818856 0 dispersed
Csa06g01131 Csa-Chr6:9394472 Csa01g00048 Csa-Chr1:276299 3.50E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g93 . Blo16g00274 . . Bpe12g00476 . Bma06g00263 . . . Cma10g00055 Cma11g00028 . Car11g00028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01355 . Bpe15g00223 . . . Cmo10g00049 . . . . . . . . . . . . . . . . . . . . . . Csa01g00048 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001844 2 3 4 3 3 2 2 2 2 2 1 2 1 2 2 2 2 5 2 2 2 2 2 2 2 1 1 4 3 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00048 Csa_Chr01 FPKM 33.295055 34.530704 31.700779 29.543913 46.62677 47.768986 48.17664 33.874958 34.036789 34.875053