Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00052 ATGGACGCCAACAATCAAGCCCAATCCTCTCCTTACCCTCCTCCTCAGGCCCCTGTTCCGGCTCCTCCCTTCCATCACCTCCTTCAGCAGCAACAACAACAGCTTCAGATGTTCTGGTCCTTTCAACGTCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTTCCTCTTGCCCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTTCGTATGATCTCTGCCGAGGCCCCCATTTTGTTCGCTAAGGCTTGTGAGCTTTTTATTCTTGAACTCACTATTAGGTCATGGCTCCACGCTGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCTGCTGCTATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTTCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGCGGTATGGTTGGAGCTACTGCTAGTGGAGTTCCGTACTATTATCCGCCTATGGGTCAACCTGCGGGGGCTCCCGGGGGAATGATGATTGGGAGACCGGCAATGGATCCCACCGGAGTTTACGCTCAGCCGCCGTCCCAGGCGTGGCAATCCGTGTGGCAAACCGCTGCTGAGGATGGTTCTTACGCGAGTGGGGCCAGCAGCGGGCAGGGTAATCTTGATGGTCAGAGCTAA 663 52.04 MDANNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGASSGQGNLDGQS* 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 296768 302062 + CsaV3_1G000520.1 Csa01g00052 514549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00052 220 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 2 220 - -
Csa01g00052 220 SUPERFAMILY Histone-fold 30 128 IPR009072 GO:0046982
Csa01g00052 220 Pfam Core histone H2A/H2B/H3/H4 48 119 IPR007125 GO:0003677
Csa01g00052 220 MobiDBLite consensus disorder prediction 1 23 - -
Csa01g00052 220 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982
Csa01g00052 220 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 2 220 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00052 Csa-Chr1:296768 Csa01g02790 Csa-Chr1:24577509 6.97E-70 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30599 PF00808 CBFD_NFYB_HMF 2.20E-17 CL0012 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00052 - - csv:101213576 363.229