Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00052 | ATGGACGCCAACAATCAAGCCCAATCCTCTCCTTACCCTCCTCCTCAGGCCCCTGTTCCGGCTCCTCCCTTCCATCACCTCCTTCAGCAGCAACAACAACAGCTTCAGATGTTCTGGTCCTTTCAACGTCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTTCCTCTTGCCCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTTCGTATGATCTCTGCCGAGGCCCCCATTTTGTTCGCTAAGGCTTGTGAGCTTTTTATTCTTGAACTCACTATTAGGTCATGGCTCCACGCTGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCTGCTGCTATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTTCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGCGGTATGGTTGGAGCTACTGCTAGTGGAGTTCCGTACTATTATCCGCCTATGGGTCAACCTGCGGGGGCTCCCGGGGGAATGATGATTGGGAGACCGGCAATGGATCCCACCGGAGTTTACGCTCAGCCGCCGTCCCAGGCGTGGCAATCCGTGTGGCAAACCGCTGCTGAGGATGGTTCTTACGCGAGTGGGGCCAGCAGCGGGCAGGGTAATCTTGATGGTCAGAGCTAA | 663 | 52.04 | MDANNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGASSGQGNLDGQS* | 221 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 296768 | 302062 | + | CsaV3_1G000520.1 | Csa01g00052 | 514549 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00052 | 220 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 2 | 220 | - | - | |
Csa01g00052 | 220 | SUPERFAMILY | Histone-fold | 30 | 128 | IPR009072 | GO:0046982 | |
Csa01g00052 | 220 | Pfam | Core histone H2A/H2B/H3/H4 | 48 | 119 | IPR007125 | GO:0003677 | |
Csa01g00052 | 220 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Csa01g00052 | 220 | Gene3D | Histone, subunit A | 24 | 134 | IPR009072 | GO:0046982 | |
Csa01g00052 | 220 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 | 2 | 220 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00052 | Csa-Chr1:296768 | Csa01g02790 | Csa-Chr1:24577509 | 6.97E-70 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30599 | PF00808 | CBFD_NFYB_HMF | 2.20E-17 | CL0012 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00052 | - | - | csv:101213576 | 363.229 |