Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00052 ATGGACGCCAACAATCAAGCCCAATCCTCTCCTTACCCTCCTCCTCAGGCCCCTGTTCCGGCTCCTCCCTTCCATCACCTCCTTCAGCAGCAACAACAACAGCTTCAGATGTTCTGGTCCTTTCAACGTCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTTCCTCTTGCCCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTTCGTATGATCTCTGCCGAGGCCCCCATTTTGTTCGCTAAGGCTTGTGAGCTTTTTATTCTTGAACTCACTATTAGGTCATGGCTCCACGCTGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCTGCTGCTATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTTCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGCGGTATGGTTGGAGCTACTGCTAGTGGAGTTCCGTACTATTATCCGCCTATGGGTCAACCTGCGGGGGCTCCCGGGGGAATGATGATTGGGAGACCGGCAATGGATCCCACCGGAGTTTACGCTCAGCCGCCGTCCCAGGCGTGGCAATCCGTGTGGCAAACCGCTGCTGAGGATGGTTCTTACGCGAGTGGGGCCAGCAGCGGGCAGGGTAATCTTGATGGTCAGAGCTAA 663 52.04 MDANNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGASSGQGNLDGQS* 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 296768 302062 + CsaV3_1G000520.1 Csa01g00052 514549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00052 220 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 2 220 - -
Csa01g00052 220 SUPERFAMILY Histone-fold 30 128 IPR009072 GO:0046982
Csa01g00052 220 Pfam Core histone H2A/H2B/H3/H4 48 119 IPR007125 GO:0003677
Csa01g00052 220 MobiDBLite consensus disorder prediction 1 23 - -
Csa01g00052 220 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982
Csa01g00052 220 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 2 220 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00052 - - - csv:101213576 363.229
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00052 Csa-Chr1:296768 Csa01g02790 Csa-Chr1:24577509 6.97E-70 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g00052 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.0 4.2e-88 321.2
Csa01g02790 . 82 249 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.9 2.6e-53 205.7
Csa07g00504 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 7.4e-53 204.1
Csa01g02790 . 1 259 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.8 6.4e-57 217.6
Csa07g00504 . 22 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 6.4e-49 191.0
Csa01g00052 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 6.9e-43 171.0
Csa01g02790 . 23 249 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.5 3.1e-61 231.9
Csa07g00504 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.0e-52 202.6
Csa01g00052 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.7e-51 199.5
Csa01g00052 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.4e-38 155.2
Csa01g00052 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 3.4e-80 295.0
Csa01g02790 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.8 6.3e-50 194.5
Csa07g00504 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.8e-49 193.0
Csa07g00504 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 2.1e-64 242.3
Csa01g00052 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 3.8e-50 194.9
Csa01g02790 . 54 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.1 6.6e-50 194.1
Csa06g02035 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.3 2.4e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30599 PF00808 CBFD_NFYB_HMF 2.20E-17 CL0012 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00052 Csa_Chr01 FPKM 123.579514 125.792175 130.607635 131.616364 119.203102 119.917595 120.864983 150.062683 151.181274 166.003311