Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00059 ATGAATAAACCCAAAATTGGAATTTCCTCCTGGGCGGGTAATATACGGTATCACCGCAGGGGAATAGAAGACTGGCTTTCATTCCGAACCACCACGAATTGCGCGAATATGGCACCGCATGACATTCGCCGTCCACACAAACGCCCGGCGATCTCTGATCAGCAGAAGCGGCGGGAACTTTCTTTGCAAAGGCAACAGCAGAATCGCCGCGATGCTCAGCAACAAGCACGTTCCTTAGCCTCCACGCTTCTCTCCCTTTCATCCTCATTCGACGAGCCTAGTACCTCCGAGCCGGTGCTGGAAATTGAACTAAACGAACTCGAATCCGGAACGGAATGTTCTCTGGAGATTTTATCGGAACGTGAGTTTAACGAACCTGCTCTGAAGGAACTCGATGTTCGCCAGGCATCGAAGCTCAAAAGTTCAGAGGCTCGTAAGTGGTTTTCGAAGCAACTGCTGCTTCCTGAGTGGATGATAGACGTTCCCGATCGACTTAGCGATGAATGGTACGTGTTTGCAAGGCCTTCCGGTAAACGGTGCTTTGTAGTTTCCTCCAATGGAACAACGATCAGTAGGCTACGAAATGGATCGATTCTGCATCGTTTTCCTTCTTCTCTACCTAACGGAGCAAAGACAAAGAAAGCCTCTGGTTCCGGTCAAACATATTCTATTCTAGATTGTATCTTTCATGAAACAGATCAAACGTACTACGTCATTGATATGATTTGTTGGCGAGGATATTCTCTTTATGATTGCGCAGCCGAGTTCCGGTTCTTCTGGCTCAATTCCAAGCTCGCTGAAAGTGGAGCTTGTGAACTGCCTTCATACTATCACAAGTATAAATTCAGCTTGGTACCTGTATACTCATGCGATCAAAATGGTCTCCATGCAGCTTATGCAGGAGCAGCACCTTTTGTCAAGGATGGTCTATTATTTTACAATAAGCATTCCCACTACCAGCCAGGAAATACACCACTTGCATTGGTCTGGAAGGATGAGAATTGCAGTCAATATGTTATTGACACGGATAGTAATGGACAAGTTCCAAGCCAACAGCAGCTGGTTTTGGAGCTACAAAGTGATGGGAAGGTGGCTACATCAGATGATCCTCCTGTGTACTTTGGATGCTTAGACGGTGACTTTCTCGGAAAGTTAGGTTTGTCTTCAGGCAATTTATTGCGATTCACCATTGGTGATGGAGGGTTAACAATTGTGGACGGGAGGATTCAAGGGGCAGATTTACAATACAGTGGCAAGGTCAATCGAGCTCGAGCCTTTGCAGATAGTTACTCCAAGGTTATGTTTCAATATGCAGCTCGTCGCTCACCTTTAAAAATAGACGATCTATTAGCATCCATCAATTCGTCGAATGATGGAGGAGGTCATGATTCTGAAATGGTTGGATAG 1407 45.91 MNKPKIGISSWAGNIRYHRRGIEDWLSFRTTTNCANMAPHDIRRPHKRPAISDQQKRRELSLQRQQQNRRDAQQQARSLASTLLSLSSSFDEPSTSEPVLEIELNELESGTECSLEILSEREFNEPALKELDVRQASKLKSSEARKWFSKQLLLPEWMIDVPDRLSDEWYVFARPSGKRCFVVSSNGTTISRLRNGSILHRFPSSLPNGAKTKKASGSGQTYSILDCIFHETDQTYYVIDMICWRGYSLYDCAAEFRFFWLNSKLAESGACELPSYYHKYKFSLVPVYSCDQNGLHAAYAGAAPFVKDGLLFYNKHSHYQPGNTPLALVWKDENCSQYVIDTDSNGQVPSQQQLVLELQSDGKVATSDDPPVYFGCLDGDFLGKLGLSSGNLLRFTIGDGGLTIVDGRIQGADLQYSGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASINSSNDGGGHDSEMVG* 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 338572 349281 - CsaV3_1G000590.1 Csa01g00059 514556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00059 468 MobiDBLite consensus disorder prediction 40 56 - -
Csa01g00059 468 Gene3D DNA ligase/mRNA capping enzyme 25 355 - -
Csa01g00059 468 MobiDBLite consensus disorder prediction 37 56 - -
Csa01g00059 468 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 148 331 - -
Csa01g00059 468 Coils Coil 62 82 - -
Csa01g00059 468 CDD Snurportin-1_C 147 333 - -
Csa01g00059 468 PANTHER SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1 31 459 IPR017336 GO:0005634|GO:0005737|GO:0061015
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00059 K13151 SNUPN, RNUT1; snurportin-1 - csv:101214543 842.417
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g113 . . . . Bpe12g00482 . . . . . Cma10g00064 . Car10g00052 . Sed08g0031 . Cpe04g01615 Bhi02g00515 Tan09g2371 Cmetu02g0530 . . . . Cla06g01739 Cam06g1929 Cec06g1979 Cco06g1983 Clacu06g1885 Cmu06g1827 Cre06g2642 . . . Cone19ag0368 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00059 Chy02g02660 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011602 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00059 Csa_Chr01 FPKM 5.23123 7.192739 24.678402 21.759834 14.375407 12.714855 14.537632 10.724243 10.631386 11.807275