Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00060 ATGGTAATGGGAGAAGAGAGTCCGAGAAGCCCAGAGGCGAAGGTGGGGATGCAAGTAGAAGATTTATGGGACATTCAAGAACCGCAGCTCAGTCCTACTGAAAAACTTAATGCTTGCTTTGAAAGCATCCCTGTTTCTGCCTTTCCTCCTGCCCCTCTTCATCAAGGGATTGAGATAAGATCGGACAGTAGTTTAGCTGAGGCGGTTCAAATTTTGGCTGAGCATAAGATTCTCAGTGCGCCTGTGGTGGATGTTGATGCACCTGATCATGCTAGTTGGATTGATAGATACATTGGTATTGTTGAGTTTGCTGGAATTGCTGTTTGGATTCTTCATCAGTCGGAACCTCCATCTCCGAGGAGTCGTAGCGGTGGGAATGCTCTGGCTGCAGCAACAAATGGGGCGATATCTCCTTTAGAACAGCAGGTACTAGGCCCGGAATCTGCTGCAGCCACCCCCGGAAGCTTTTTCGAATCCTTAACTTCCTCTGAATTGTACAAGAGCACACAGGTGAGAGACATCTCGGGATCTTTTCGTTGGGCCCCATTTTTAGCTTTGCAGACATCGAATTCCTTCTTGACTATGCTCTTACTTTTATCAAAGTACAAAATGAAGAGCATACCAGTTGTGGACTTGGGGGAGGGAAAGATTGAGAACATCATCACACAATCAGCTGTGATTCACATGTTAGCAGAATGTGCAGGGCTTCAATGGTTTGAAAGATGGGGAACAAAGACGGTATCCGAGCTCGGTCTTCCAATGATGTCACCAGCTTCTATTGTCAAGGTGTACGAGGACGAACCCGTTTTACAAGCATTCAAACTTATGAGGAAGAAGAGGGTTGGAGGTATACCTGTTATTGAAAAGGGTGGTAGAGCAGTAGGCAACATTAGTTTAAGAGATATTCATTTCTTGCTCACTGCACCAGAAATCTACCACGATTACAGATCGATAACGGCGAGAAACTTCCTAACTGCTGTTAGAGACTACTTAGAGAAGCACGAAGAGTCCTCTCCAATGCTAAGCAACATGATTACGTGCAAGAAGGACAACACAATAAAGGATCTGATTTTGATGCTTGACTCGAAGAAGATCCATCGTGTGTATGTTGTCGACGATGATGGCAATCTAGAAGGAGTTATCACTCTCAGAGACATCATCTCGAGGTTAGTCCACGAACCGCGTGGTTACTTTGGCGATTTCTTTGACGGTGTTCTGCCATTGCCTCAAAACAGTCGGGTTTGA 1245 45.46 MVMGEESPRSPEAKVGMQVEDLWDIQEPQLSPTEKLNACFESIPVSAFPPAPLHQGIEIRSDSSLAEAVQILAEHKILSAPVVDVDAPDHASWIDRYIGIVEFAGIAVWILHQSEPPSPRSRSGGNALAAATNGAISPLEQQVLGPESAAATPGSFFESLTSSELYKSTQVRDISGSFRWAPFLALQTSNSFLTMLLLLSKYKMKSIPVVDLGEGKIENIITQSAVIHMLAECAGLQWFERWGTKTVSELGLPMMSPASIVKVYEDEPVLQAFKLMRKKRVGGIPVIEKGGRAVGNISLRDIHFLLTAPEIYHDYRSITARNFLTAVRDYLEKHEESSPMLSNMITCKKDNTIKDLILMLDSKKIHRVYVVDDDGNLEGVITLRDIISRLVHEPRGYFGDFFDGVLPLPQNSRV* 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 349622 353054 - CsaV3_1G000600.1 Csa01g00060 514557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00060 414 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 7 414 - -
Csa01g00060 414 SUPERFAMILY CBS-domain pair 28 231 IPR046342 -
Csa01g00060 414 CDD CBS_pair_SF 196 302 - -
Csa01g00060 414 ProSiteProfiles CBS domain profile. 340 398 IPR000644 -
Csa01g00060 414 ProSiteProfiles CBS domain profile. 255 315 IPR000644 -
Csa01g00060 414 PANTHER BNAA06G16460D PROTEIN 7 414 - -
Csa01g00060 414 Pfam CBS domain 340 391 IPR000644 -
Csa01g00060 414 Pfam CBS domain 255 302 IPR000644 -
Csa01g00060 414 Gene3D - 244 393 IPR046342 -
Csa01g00060 414 Gene3D - 35 237 IPR046342 -
Csa01g00060 414 SMART cbs_1 182 231 IPR000644 -
Csa01g00060 414 SMART cbs_1 55 111 IPR000644 -
Csa01g00060 414 SMART cbs_1 343 391 IPR000644 -
Csa01g00060 414 SMART cbs_1 259 307 IPR000644 -
Csa01g00060 414 SUPERFAMILY CBS-domain pair 242 400 IPR046342 -
Csa01g00060 414 CDD CBS_pair_SF 260 387 - -
Csa01g00060 414 ProSiteProfiles CBS domain profile. 52 118 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00060 - - - csv:101214786 784.637
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00060 Csa-Chr1:349622 Csa01g03407 Csa-Chr1:30921261 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g117 . . Bda06g00730 . Bpe12g00484 . . . . . Cma10g00066 Cma11g00036 Car10g00054 Car11g00033 . . Cpe04g01613 Bhi02g00681 . . . . . . Cla06g01738 Cam06g1928 . Cco06g1982 Clacu06g1884 . Cre06g2641 . . Cone13ag0216 Cone19ag0205 . . . . . Blo15g00210 . . . . . . . Cmo10g00062 Cmo11g00038 . . . . . . . . . . . . . . . . . . . . Lsi06g01638 Csa01g00060 Chy02g02659 Cme02g02061
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003995 2 1 2 1 2 1 2 1 0 2 1 1 2 2 2 2 0 2 2 1 2 1 1 1 1 0 1 4 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00060 Csa_Chr01 FPKM 0.55914 1.097672 0.593668 0.578111 1.474881 0.862808 0.796426 1.90172 0.828526 1.678077