Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00062 ATGGCGCCTTCCTCTTCTTCTTCTGGTCATGGCGCTTCCAAGTTCCTTGGCGACCTTCCTTCCCGTGGCTTCTTCTCTTCCACCGTTCCCTCCTCAAATCCGGGAAGTATGCGGGTGTACATCTGCCTTCATGACACTGCACCGCCAGAGGATCAAGAAATCAAGACAAACCAGCAGAATATACTAATTAGATCTTTGATGCTTAAAAATTCCAGCTCGAAGGATGGAAAAGGAGTAGCTACAGGGGAGTCATCTCGAAAGAGGGCTGGGGAAAAAATTTCAGATAGCAGAGCAAAGAAGGCCGCACAAGTATGTTCATCCAAAGGAGCATCAAACAATGAAACACCAACTAAGGATCTACAGAATTTGACTGTAGAGAGGCTGCGTGCCCTTCTCAAGGCTAAAGGCCTCTCGCTCAGAGGAAAGAAGGATGAATTAATTGCCCGTTTGAGAAGCGCGGATGGGTAG 468 47.86 MAPSSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQNILIRSLMLKNSSSKDGKGVATGESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPTKDLQNLTVERLRALLKAKGLSLRGKKDELIARLRSADG* 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 354128 357620 + CsaV3_1G000620.1 Csa01g00062 514559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00062 155 SUPERFAMILY SAP domain 114 151 IPR036361 -
Csa01g00062 155 MobiDBLite consensus disorder prediction 1 36 - -
Csa01g00062 155 PANTHER DET1- AND DDB1-ASSOCIATED PROTEIN 1 4 153 IPR033575 GO:0032434
Csa01g00062 155 Gene3D SAP domain 97 155 IPR036361 -
Csa01g00062 155 ProSiteProfiles SAP motif profile. 120 154 IPR003034 -
Csa01g00062 155 PANTHER DET1- AND DDB1-ASSOCIATED PROTEIN 1 4 153 - -
Csa01g00062 155 Pfam SAP domain 120 153 IPR003034 -
Csa01g00062 155 MobiDBLite consensus disorder prediction 67 120 - -
Csa01g00062 155 MobiDBLite consensus disorder prediction 80 98 - -
Csa01g00062 155 MobiDBLite consensus disorder prediction 105 120 - -
Csa01g00062 155 Pfam Det1 complexing ubiquitin ligase 14 69 IPR018276 -
Csa01g00062 155 SMART sap_9 120 154 IPR003034 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00062 - - - csv:101215024 298.901
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g118 . . . . . . . . . . . Cma11g00037 . Car11g00034 . . Cpe04g01612 . . . . . . . Cla06g01737 Cam06g1927 Cec06g1978 Cco06g1981 Clacu06g1883 Cmu06g1826 Cre06g2640 Cone2ag0971 Cone16ag0019 . . . . . . . . . . Bpe07g00888 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01637 Csa01g00062 Chy02g02657 Cme02g02060
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007475 2 2 1 1 2 1 2 1 1 1 1 1 2 1 1 0 1 2 2 1 1 1 1 1 1 0 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00062 Csa_Chr01 FPKM 0.752309 0.666011 0.72782 0.767077 2.011276 2.014112 1.837545 0.659671 0.552613 0.674886