Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00066 ATGCAATCTGAATTTTTGGGCAGTTTTTCCATCCTCGGTTCGCCACATTCAGCTCCTTACAAGCAGAGGATGGCGTCCTTTGGCGCTCTTTCACTTTGTCCTTGCAGCCCACTTTTACGTCCTCATCACCCAGTTCGTACTATTTATTGTTGCCGTGGATCTCCTACAGTTTTAGGCAAAAATGTTTCTAAAGTACCCCGAAAAAGACCGGGGAGATTGGAAGGTGCTAAAAGAAGCATGGAAGACTCTGTTCAACGCAAGATGGAACAGTTTTATGAAGGTTCGGATGGTCCACCTCTCCGAGTTCTTCCAATTGGTGGCCTTGGTGAAATTGGGATGAATTGTATGCTTGTTGGGAATTATGACCGCTACATTCTGATCGATGCTGGCGTCATGTTTCCTGACCATGATGAGCTTGGTGTCCAGAAAATTATACCTGATACCACATTTATAAAGAGATGGAGTCACAAAATTGAAGCTGTTGTTATTACACATGGCCATGAAGATCACATTGGTGCGTTGCCTTGGGTAATTCCAGCTTTGGATTCTCATACACCAATATATGCATCTTCCTTTACAGTGGAGCTTATAAAAAAGCGTCTGAAGGAAAATGGGATTTTTGTTCCTTCTCGACTTAAGGTGTTTAAGATGAGAAAGAAATTTACAGCTGGTCCATTTGAAATAGAGCCAATTAGGGTCACTCATTCCATTCCCGATTGTTGTGGATTAGTTCTTCGATGTACTGATGGTACAATTCTTCATACTGGAGACTGGAAGATTGATGAATCGCCATTGGATGGTAAAGTATTTGATCGAGAAACTTTGGAACAACTATCAAAAGAAGGAGTGACTCTTATGATGAGTGACTCAACGAACGTACTATCTCCTGGAAGAACCATTAGTGAGTCTGTGGTGGCAGATGCACTTTTAAGACGTATCTCTGCCGCTAAAGGAAGGGTCATCACGACTCAGTTTGCTTCAAATATACACCGTCTTGGAAGTGTGAAAGCAGCCGCAGATTTAACTGGGAGAAAGTTGGTATTTGTTGGTATGTCTTTACGGACATATCTGGATGCAGCCTGGAAAGATGGGAAGGCACCAATCGATCCATCAACCTTGGTAAAAGTGGAGGACATTGATGCCTATGCTCCAAAAGATCTATTAATTGTTACAACTGGCTCACAAGCAGAACCACGTGCTGCGCTAAATCTTGCATCTTATGGAAGTAGTCACTCTCTTAAACTGAGCAAGGAAGACATGATTTTGTATTCGGCCAAGGTGATACCTGGTAACGAATCCAGAGTGATGAAAATGTTGAACCGTATATCAGAGATCGGATCAAATATAATAATGGGCAAGAACGAGTTGCTGCACACATCTGGTCATGGATACCGTGGAGAATTAGAGGAAGTACTTCAAATTGTAAAGCCGCAACATTTTTTACCCATTCATGGGGAGCTTTTATTCCTCAAGGAGCATGAACTGCTGGGTCGGTCTACTGGCATTCGGCACACAACTGTTATAAAAAATGGAGAAATGCTTGGAGTTTCTCATCTAAGAAACAGAAGAGTTTTATCCAACGGTTTCACCTCTCTTGGGAGGGAGAATTTACAGTTGAAGTATAGTGATGGTGACAAAGCATTTGGATCCTCATCTGAGCTTTTCGTTGATGAGAGACTAAAGATTGCAACAGATGGCATTATAGTAGTCAGTATGGAAATTTTGCGACCTCAAAGTGTAGATGGTTTAAATGGGACTGGCATCAAAGGAAAGCTAAGGATCACTACTCGATGTTTATGGCTTGACAAGGGGAAGCTTTTAGATGCACTTCATAAAGCCGCTCATGCTGCACTTTCAAGCTGCCCGCTGAATTGTCCTCTAGCTCACATGGAAAGAACTGTGGCTGAGCTTCTGAGGAAGATGGTTAGAAAGTACAGTGGTAAGAGGCCTGAAGTCATAGTCATGGCTGTGGAGAGCCCTGTAGGAGTTCTAGCCGAAGAGCTTGGAGCAAGGCTTGCAGGCAAGTCCAATAGTGGATTTGGGATGTCAGCATCACGAAAAGCAGTTGATGGACAACCAACTAAGAGCCACTTAAACAGCATAAGACCAGATGGAAATAACGATTTGCATTCTGAGGATAACTCAAGTCAGGAGTCTCAAGGTTATCATTTGGAATCTGAAAGACTACTTCCTGAAGAGGACTATGATACCACGAACTTGAACTTGACAGAGACACAATCCATTGATAACGAAGGTTTGGAGGATTTCTGGAAACCATTTATCACGCCATCCTCTCCTGCCAACGAATTGGCGATGGATAACGAAGGTTCTGTTCAACATTCAGAAAGTACGTTGGAGATTTCAAACGAACGTGAAGAAGTCAGTGATGACAAGTCACTGAAAACATCAAATTCTGATGTGAACTCTTCAAAGCCTGTGAAACGCAATAAATGGAAACCTGAGGAGATCAAGAAACTTATTAAATTGCGGGGGGAATTGCATGACAGGTTTCAAGTGGCCAGGGGACGAATGGCATTGTGGGAAGAGATATCCAATGGTATGTCGGCTGATGGTATTAATCGGAGTCCCGGACAGTGCAAATCTCTTTGGGCATCTCTGGTTCAGAAATTTGAGGAAAGCAAAAGTGAAAAGAAAAGCAAGAAGGGTTGGCCATACTTGGAGGAAATGAGTGGCATATTGTCTGATTCAGAGGCAGTGGCAACAAAATGA 2730 42.82 MQSEFLGSFSILGSPHSAPYKQRMASFGALSLCPCSPLLRPHHPVRTIYCCRGSPTVLGKNVSKVPRKRPGRLEGAKRSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDHDELGVQKIIPDTTFIKRWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIYASSFTVELIKKRLKENGIFVPSRLKVFKMRKKFTAGPFEIEPIRVTHSIPDCCGLVLRCTDGTILHTGDWKIDESPLDGKVFDRETLEQLSKEGVTLMMSDSTNVLSPGRTISESVVADALLRRISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSLKLSKEDMILYSAKVIPGNESRVMKMLNRISEIGSNIIMGKNELLHTSGHGYRGELEEVLQIVKPQHFLPIHGELLFLKEHELLGRSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFTSLGRENLQLKYSDGDKAFGSSSELFVDERLKIATDGIIVVSMEILRPQSVDGLNGTGIKGKLRITTRCLWLDKGKLLDALHKAAHAALSSCPLNCPLAHMERTVAELLRKMVRKYSGKRPEVIVMAVESPVGVLAEELGARLAGKSNSGFGMSASRKAVDGQPTKSHLNSIRPDGNNDLHSEDNSSQESQGYHLESERLLPEEDYDTTNLNLTETQSIDNEGLEDFWKPFITPSSPANELAMDNEGSVQHSESTLEISNEREEVSDDKSLKTSNSDVNSSKPVKRNKWKPEEIKKLIKLRGELHDRFQVARGRMALWEEISNGMSADGINRSPGQCKSLWASLVQKFEESKSEKKSKKGWPYLEEMSGILSDSEAVATK* 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 378802 389948 - CsaV3_1G000660.1 Csa01g00066 514563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00066 909 MobiDBLite consensus disorder prediction 681 725 - -
Csa01g00066 909 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 454 494 IPR011108 -
Csa01g00066 909 Gene3D - 104 516 IPR036866 -
Csa01g00066 909 Pfam Myb/SANT-like DNA-binding domain 815 897 IPR044822 -
Csa01g00066 909 ProSiteProfiles Myb-like domain profile. 810 874 IPR001005 -
Csa01g00066 909 PANTHER RIBONUCLEASE J 17 909 - -
Csa01g00066 909 Pfam Beta-lactamase superfamily domain 123 259 IPR001279 -
Csa01g00066 909 MobiDBLite consensus disorder prediction 785 800 - -
Csa01g00066 909 MobiDBLite consensus disorder prediction 757 816 - -
Csa01g00066 909 MobiDBLite consensus disorder prediction 681 705 - -
Csa01g00066 909 SUPERFAMILY Metallo-hydrolase/oxidoreductase 100 514 IPR036866 -
Csa01g00066 909 CDD GT1 816 877 - -
Csa01g00066 909 CDD RNaseJ_MBL-fold 103 514 - -
Csa01g00066 909 SMART Lactamase_B_5a 112 309 IPR001279 -
Csa01g00066 909 Gene3D - 818 879 - -
Csa01g00066 909 Gene3D - 301 451 IPR042173 -
Csa01g00066 909 MobiDBLite consensus disorder prediction 767 784 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00066 - - - csv:101215740 1778.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00066 Csa-Chr1:378802 Csa05g00132 Csa-Chr5:686982 5.60E-10 dispersed
Csa01g00066 Csa-Chr1:378802 Csa04g01622 Csa-Chr4:15600258 5.38E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g135 . . . . . . . . . . Cma10g00071 Cma11g00042 Car10g00058 Car11g00038 Sed08g0040 . Cpe04g01607 Bhi02g00533 Tan09g2359 Cmetu02g0049 . Hepe09g0058 . . Cla06g01733 Cam06g1924 Cec06g1974 Cco06g1978 Clacu06g1880 Cmu06g1822 Cre06g2637 . . . . . . . . . . . . . . . . . Cmo10g00066 Cmo11g00043 . . . . . . . . . . . . . . . . . . . . Lsi06g01633 Csa01g00066 Chy02g02654 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006250 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 3 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30600 PF12706 Lactamase_B_2 3.40E-11 CL0381 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00066 Csa_Chr01 FPKM 0.0 0.0 1.737176 1.657233 3.126563 4.45098 3.695619 3.011634 1.948763 2.514651