Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00068 ATGACGTCCACGTATCTTCTCTATGAATCTGCTTCTGGCTATGCTCTGTTTCATGCCCATGGCCTTGACGAAATTGGTCAGAACACCGAAGCTGTTAGGAGCTCTGTTTCCGACCTCAACCGCTTCGGCAAGGTCGTGAAGCTTGCTGCTTTTCACCCCTTTGAGTCGGCTCTCGATGCTCTCAAACAGTGCAACTCTGTCTCCGAAGGGCTTATGACCGATGAGTTGAGGAGTTTTCTGGAAATTAACCTTCCAAAAGCTAAGGAAGGTAAAAAGGCTAAGTTCGTTTTGGGACTAGCTGAACCCAAAATTGGGTCAAACATCTTTGAAGAGACTAAAATCCCATGTCAAAGCAACGAGTTTGTTCTGGAGCTTCTTCGTGGTGTGCGTCTTCACTTTGACAAATTTATCAAAGATCTCAAGCAAGGAGATTTGGAGAAGGCTCAACTTGGTCTGGGACACAGTTATAGTAGAGCGAAAGTGAAGTTCAATGTTAACCGTGTCGATAACATGGTTATTCAAGCCATCTTTCTTCTTGACACTTTGGACAAAGACATTAATTCCTTCTCCATGAGAGTCAGAGAGTGGTACTCATGGCATTTCCCTGAGTTGGTGAAGATTGTCGGTGACAATTATCTTTATGCCAAACTTGCTAAATACATTCAAGACAAGTCGAAGTTGGCTGAAGATAAAATCCCCAGCTTGACAGACATAATTGGCGATGAAGATAAAGCAAAGGAGATTGTTGAAGCAGCCAAGGCCTCCATGGGTCAGGATTTGTCTGATATCGACTTGATTAATGTCCAGCAATTTGCACAGAGGGTGATGGATCTTTCTGATTACAGGAAGAAACTTTATGATTATCTAGTTACTAAAATGAACGATATTGCTCCCAATTTGGCCTCTTTGATTGGTGAAGTTGTTGGGGCCCGTTTAATTTCTCATGCTGGTAGTCTCACAAATTTGGCCAAGTGCCCTTCTTCCACTCTTCAGATTCTTGGTGCTGAGAAAGCACTCTTCAGGGCTTTGAAAACAAAAGGAAACACTCCTAAATATGGTCTGATCTTTCATTCTTCTTTCATTGGGCGAGCATCTGCGCGCAACAAAGGCCGAATGGCACGTTATCTTGCAAACAAATGCTCTATTGCAACACGTATCGATTGCTTTGCAGAGAGCAGTACCACAACCTTTGGAGAGAAACTTCGTGAGCAAGTTGAAGAGCGGCTTGACTTTTATGACAAGGGCATAGCACCACGTAAAAACATAGATGTTATGAAAGCTGCAATTGAAAGTGCTGATAACAAAGCAACTGATATGGACGTAGAAGAAGTGCCAAGCGAAGCTTCAGGGAAGAAAAGCAAGAAAAAGAAATCGAAGTCTAATGCTAACGGTGAGGTTGAAGACAGGCCAAGTGCTACTGCAAACGGTGATGTCACAGAGGATACAAAATCAGAAAAGAAGAAAAAGAAGGAGAAGCGAAAGATGGAAAGGGAAACAGAGGAACAGCAGCAGGCTTCAGAAATCATAAATGGCGAGGAAGAAGCAGGCAAGAAGAAAAAGAAAAAGAAGAGCAAGGATGAAAACAAGGATGATCAAGTTGCTGCTGAAGACGGTAAGAAGAAGAAGAAGAAAAAGTCGAAAAGTGAAGATGCCGAATGA 1659 42.8 MTSTYLLYESASGYALFHAHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPFESALDALKQCNSVSEGLMTDELRSFLEINLPKAKEGKKAKFVLGLAEPKIGSNIFEETKIPCQSNEFVLELLRGVRLHFDKFIKDLKQGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVGDNYLYAKLAKYIQDKSKLAEDKIPSLTDIIGDEDKAKEIVEAAKASMGQDLSDIDLINVQQFAQRVMDLSDYRKKLYDYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTKGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIATRIDCFAESSTTTFGEKLREQVEERLDFYDKGIAPRKNIDVMKAAIESADNKATDMDVEEVPSEASGKKSKKKKSKSNANGEVEDRPSATANGDVTEDTKSEKKKKKEKRKMERETEEQQQASEIINGEEEAGKKKKKKKSKDENKDDQVAAEDGKKKKKKKSKSEDAE* 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 407157 411061 + CsaV3_1G000680.1 Csa01g00068 514565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00068 552 MobiDBLite consensus disorder prediction 511 552 - -
Csa01g00068 552 PANTHER BNACNNG34340D PROTEIN 3 550 - -
Csa01g00068 552 Pfam NOP5NT (NUC127) domain 5 70 IPR012974 -
Csa01g00068 552 MobiDBLite consensus disorder prediction 479 503 - -
Csa01g00068 552 Coils Coil 485 515 - -
Csa01g00068 552 Gene3D - 141 299 - -
Csa01g00068 552 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 3 550 IPR045056 GO:0030515|GO:0031428|GO:0032040
Csa01g00068 552 MobiDBLite consensus disorder prediction 434 451 - -
Csa01g00068 552 Pfam snoRNA binding domain, fibrillarin 178 410 IPR002687 -
Csa01g00068 552 MobiDBLite consensus disorder prediction 434 552 - -
Csa01g00068 552 Gene3D Nop domain 300 412 IPR042239 -
Csa01g00068 552 SUPERFAMILY Nop domain 164 413 IPR036070 -
Csa01g00068 552 SMART NOSIC_2 171 223 IPR012976 -
Csa01g00068 552 ProSiteProfiles Nop domain profile. 296 414 IPR002687 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00068 K14564 NOP56; nucleolar protein 56 - csv:101216223 998.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00068 Csa-Chr1:407157 Csa02g00345 Csa-Chr2:2380299 8.68E-113 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g142 . . Bda06g00736 . . . . Bma12g01076 . . Cma10g00072 . Car10g00060 . . . . Bhi02g00536 . . . Hepe09g0060 . . Cla06g01731 Cam06g1922 Cec06g1972 Cco06g1976 Clacu06g1878 Cmu06g1820 Cre06g2635 . . Cone13ag0211 Cone19ag0200 . . . . . Blo15g00215 . . Bpe07g00883 . . . . Cmo10g00069 . . . . . . . . . . . . . . . . . . . . . Lsi06g01631 Csa01g00068 Chy02g02652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003680 2 1 2 1 2 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 1 1 1 3 3 1 1 3 3 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00068 Csa_Chr01 FPKM 2.618978 3.04075 0.984744 1.068252 1.11159 1.72722 1.087558 0.0 0.11619 0.0