Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00069 ATGGCTAGTAGTTCTGGATCAGCCAGCTTAGAAGATGTTCCCTCCATTCATCTCATGACCGAGCTTCTCCGTCGCATGAAATGCGCTTCAAAACCCGACAAGCACCTCATTCTCATTGGTCCACCTGGATCAGGAAAAGGTACCCAATCTCCAATTATCAAGGATGAATACTGCTTGTGTCACTTGGCTACTGGTGATATGTTAAGAGCTGCTGTTGCTGCAAAAACTCCACTTGGTGTTAAGGCTAAGGAGGCCATGGACAAGGGTGAACTTGTGTCTGATGATTTGGTTGTTGGCATCATTGATGAGGCAGTTAAGAAGCCTTCATGTCAGAAAGGTTTCATTCTTGATGGATTTCCTAGAACCGTGGTCCAAGCACAGAAGCTGGATGAGATGCTAGAAAAGCAGGGTGCTAAAATTGATAAGGTGCTTAATTTTTCCATTGACGATGCAATCTTGGAGGAAAGGATTACTGGACGATGGATACACCCATCCAGCGGGAGGTCTTATCACACCAAATTTGCTCCTCCAAAGGTTGCTGGCATTGATGATGTTACGGGAGAACCTCTGATTCAACGTAAGGATGATACTGCAGCAGTTCTCAAATCTCGGCTGGAGGCTTTCCACAAGAAAACAAAGCCAGTGGTTGATTACTATTCCAAGAAGAAAATTGTGGTAGATCTTCAAGCAGAGAAGCCTCCCAAAGATGTAACAGAAGAGATTCAGAAAGTGCTCTCATCCTAG 744 44.76 MASSSGSASLEDVPSIHLMTELLRRMKCASKPDKHLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIIDEAVKKPSCQKGFILDGFPRTVVQAQKLDEMLEKQGAKIDKVLNFSIDDAILEERITGRWIHPSSGRSYHTKFAPPKVAGIDDVTGEPLIQRKDDTAAVLKSRLEAFHKKTKPVVDYYSKKKIVVDLQAEKPPKDVTEEIQKVLSS* 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 411387 414207 + CsaV3_1G000690.1 Csa01g00069 514566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00069 247 Hamap Adenylate kinase [adk]. 34 246 IPR000850 GO:0005524|GO:0006139|GO:0019205
Csa01g00069 247 ProSitePatterns Adenylate kinase signature. 114 125 IPR033690 -
Csa01g00069 247 Pfam Adenylate kinase 38 223 - -
Csa01g00069 247 Pfam Adenylate kinase, active site lid 160 195 IPR007862 GO:0004017
Csa01g00069 247 PANTHER NUCLEOTIDE KINASE 11 247 IPR000850 GO:0005524|GO:0006139|GO:0019205
Csa01g00069 247 TIGRFAM adk: adenylate kinase 36 245 IPR006259 GO:0004017|GO:0005524|GO:0016776
Csa01g00069 247 CDD ADK 36 237 IPR000850 GO:0005524|GO:0006139|GO:0019205
Csa01g00069 247 PANTHER ADENYLATE KINASE 4-LIKE 11 247 - -
Csa01g00069 247 Gene3D - 7 246 IPR027417 -
Csa01g00069 247 PRINTS Adenylate kinase signature 37 50 IPR000850 GO:0005524|GO:0006139|GO:0019205
Csa01g00069 247 PRINTS Adenylate kinase signature 65 79 IPR000850 GO:0005524|GO:0006139|GO:0019205
Csa01g00069 247 PRINTS Adenylate kinase signature 114 130 IPR000850 GO:0005524|GO:0006139|GO:0019205
Csa01g00069 247 PRINTS Adenylate kinase signature 193 208 IPR000850 GO:0005524|GO:0006139|GO:0019205
Csa01g00069 247 PRINTS Adenylate kinase signature 210 224 IPR000850 GO:0005524|GO:0006139|GO:0019205
Csa01g00069 247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 245 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00069 K00939 adk, AK; adenylate kinase [EC:2.7.4.3] - csv:101216714 489.189
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00950 Csa01g00069 CCT
Csa01g00069 Csa01g00950 ECH
Csa01g00950 Csa01g00069 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00069 Csa-Chr1:411387 Csa02g00247 Csa-Chr2:1657452 2.90E-37 dispersed
Csa06g00468 Csa-Chr6:3971701 Csa01g00069 Csa-Chr1:411387 8.09E-39 transposed
Csa01g00069 Csa-Chr1:411387 Csa01g00950 Csa-Chr1:5897638 3.60E-162 wgd
Csa01g00069 Csa-Chr1:411387 Csa03g02514 Csa-Chr3:23562293 8.14E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g143 . . Bda06g00737 . . . . Bma12g01075 . Cmo18g00202 . . Car10g00061 . . . . Bhi02g00537 . . . Hepe09g0061 . . . . . . . . . Cone2ag0964 Cone16ag0028 . Cone19ag0199 Lsi02g00488 Csa01g00950 Chy12g01181 Cme12g01602 . Blo15g00217 Bda11g01817 . Bpe07g00882 . . . . . . . . . Car18g00219 Cpe09g00971 . Bhi08g01461 . . . . . . Cla03g00344 Cam03g0360 . Cco03g0365 Clacu03g0361 Cmu03g0966 Cre03g0659 . Csa01g00069 Chy02g02651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003681 2 2 1 2 2 1 2 0 0 2 1 1 1 2 2 2 1 2 2 1 2 2 2 2 2 0 2 2 1 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00069 Csa_Chr01 FPKM 22.206179 24.344025 9.258568 10.041302 5.775353 7.637078 8.365893 0.931411 0.727748 0.752128