Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00072 ATGCCTTCATTCCGCGCGTTCCTCAACAGCCCCGTTGGCCCTAAAACAACTCATTTTTGGGGACCTGTTGCCAACTTTGGTTTCGTTGCTGCTGGGCTTGCAGATGTGAAAAAACCTGCCGACATGATTTCTGGGAGAATGACGGGAGTTCTCTGCGTCTATTCGTTGTTATGCATGAGATTTGGGTATATGGTTCGACCTCGAAACTATTTGCTTATGGGATGTCATGCTGCAAATGAATCTGTTCAGCTCTATCTTCTCTCTCGTTGGGCGTTGGGGCAGAGGAAGACTGTAGATTACAGCAACGAGTAG 312 47.76 MPSFRAFLNSPVGPKTTHFWGPVANFGFVAAGLADVKKPADMISGRMTGVLCVYSLLCMRFGYMVRPRNYLLMGCHAANESVQLYLLSRWALGQRKTVDYSNE* 104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 428413 430044 + CsaV3_1G000720.1 Csa01g00072 514569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00072 103 Pfam Mitochondrial pyruvate carriers 4 96 IPR005336 GO:0005743|GO:0006850
Csa01g00072 103 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 1 95 - -
Csa01g00072 103 PANTHER MITOCHONDRIAL PYRUVATE CARRIER 1 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00072 K22138 MPC1; mitochondrial pyruvate carrier 1 - csv:101217186 217.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00072 Csa-Chr1:428413 Csa06g02890 Csa-Chr6:25142584 8.97E-52 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g148 . . . . . . . . . . Cma10g00073 Cma11g00047 Car10g00062 Car11g00041 . . Cpe04g01604 Bhi02g00541 Tan09g2354 . . Hepe09g0064 . . Cla06g01729 Cam06g1919 Cec06g1969 Cco06g1973 Clacu06g1875 Cmu06g1817 Cre06g2632 Cone2ag0961 Cone16ag0030 . Cone19ag0198 . . . . . . . . . . . . . Cmo10g00070 Cmo11g00047 . . . . . . . . . . . . . . . . . . . . Lsi06g01627 Csa01g00072 Chy02g02648 Cme02g02048
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003153 1 3 0 1 1 1 3 2 1 1 2 2 1 1 2 1 1 3 3 2 2 2 2 2 2 2 1 2 3 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00072 Csa_Chr01 FPKM 11.17837 12.63259 12.312641 11.962193 12.598556 11.91245 14.286223 13.227328 13.347188 13.585084