Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00073 ATGGCTCCGACTGTTCCTATAGAGTTTGCTGGACAGAAGGAATCTCGAAAGTATTCACTTTCACAGGCAATGGGGAAATCGAGGAAATATTCCAAAGGGCTTTCTTTTGGTTTTGTTCCGGATTACCGACATGCTGTGGAAACAGTTGGCGAATCAGAAGGGTTTGGGAGCTCTGGACGAATGGATACTGGAATCTCTACTCTTGATGATTCACGGGCCATTAAGAGGAAACGTATTAGTATGAATGCAGATGGTTACGATTGTTTTGGTGCTCCACTTCAAGTTTTTTCTCTATCAACATTGTCTCGGTCTGAAAGGAAGGATTTAGAGTTAAGGTTAAAGTTAGAACTTGAGCAGGTCCGACTGCTGCAAAAAAGAGCTTCTAATGTTAGTTCAAATTTTGCTGTCTCATCATCTAGTAATATCCAGAGTTCTAGTGATCAGCACAGGGGAGCTCCTCCAGAGACTTTAAATAGGTTGAATGAGGCATCGGTTCCTCCTGCTAAAAAGCAGCTAGTGCCCTCTGGACGCAATGGCCCTTCTGCTAAAAGAAGTTCATCTGGGCGGTTTGAGTCTGCTAAACCAGCTGCTGTATCTGCATCCTCAACTGCGTCATTGAAACAATGTGAACAGCTGCTGCAACGCTTGATGTCACATACATTTGGTTGGGTGTTTAACACTCCAGTGGATGTGGTCAAGTTGAATATTCCAGATTACTTTACTGTTATAAAGCATCCGATGGATCTGGGCACTGTGAAGTCTAAGCTTACTGCAGGAGAATACACCCATCCATTGGATTTTGCTGCTGATGTTCGACTTACTTTTTCAAATGCAATGACTTACAACCCTCCAGCTAATGACGTCCATACCATGGCTAAAACACTAAGTAAATTTTTTGAAGTTAGATGGAAAACTATAGAGAAGAAATTCCCTACGACAACTGAAGAACAACGTCAAGTACCTTCAGCCACGACTGTTCCCAAGGAAGCTGAAAGTGCTCTGCCAGTGCCACCTCCAAAAAAGACGAAATTCCCTACAAACGACCCTGATGTTCAGCCAACCAGTGTGGTAAAAGTCATGACTGACCAGGAGAAGCATAAACTAAGTGTAGAGTTGGAGGCTTTGCTGGGAGAGTTACCTGAAAGCATCATTAATTTCCTAAAGGAGCATAGTTCTAATTCTCAAGCTGGTGAGGATGAGATTGAAATTGACATCGATGCTCTTAGTGATGATACCTTGTTTGCCTTGAGGAAACTATTAGACGATTATATGATGGAAAAGCAGAAATGCACAAAGGCTGAACCATGTGTAGTAGAGCTTCATAATGAATCAGGATTTAGCAATTCATCAATGCCACCAAGTAAAGGAAATGATCCCATTGATGAGGATGTTGACATTTTGGGTGGAAATGACCCCCCTGTTTCAAGCTATCCTCCGATAGAGATAGAAAAAGATGCAGTCCGTAGAGATAGTAAATGCAGTAATTCCAGTAGCTCGAGTAGTGAATCAGGTTCTTCATCTAGTGATTCTGGCACAGAAAGCTTGTCGGGAAGTGAATCTAATGCTGCTAAAGCTTTAGAGAGTAATGTGGCTCCAAAGGAAATTTTGTGTTTTGAAACAAATGTGGATCAGAAGCAATGCGAACTTGGTGATTTAGAAATTGGAAATTATGAAGAAAATGAGATTGGTCTAGTTGATCAAACCGCAGAGGCCAATACGAACACTATTGAGCCAGATAGCTACCAAGAGGAGGGGGAGAGTGCTCCATCTAAGAGGCAAGTCTCCCCCGACAGGCTTTACCGTGCAGCTTTGTTAAGGAACCGTTTCGCTGACACTATACTGAAAGCTCGAGAAAAGGCACTTGAAAAGGGTGACAAACGGGATCCTGAAAAAGTGAGAATGGAGAGGGAAGAACTCGAAAGACAGCAAAGAGAAGAAAAAGCACGGTTGCAAGCGGAGGCAAAAGCTGCAGAGGATGCTCGGAGGAAGGCTGAAGCTGAAGCTGCAGCCGAAGCTAAGAAGAAAAGGGAGTTGGATAGAGAAGCTGCACGTCAAGCCTTACTTAAGATGGAAAAGACTGTTGATATTAATGAGAACAGTCAATTCATGGAGGATCTAGAAATGCTTAGGGCTTCCAACGACGAGCTTCTACCAAACTTCACAGAGGAGTCAAGCCCAGAACATTCTCAGAATGGATTTGGCAGTTTCAAACTTCAAGGTAGTAACCCCTTAGAACAACTTGGTTTGTACATGAAGGTGGATGAGGAAGATGAAGAGGAAGAAAGTGAACCACCTCAAAGTGTTAATAAGGCAGCAAATGATGTTGAAGAAGGGGAAATCGATTAG 2346 42.92 MAPTVPIEFAGQKESRKYSLSQAMGKSRKYSKGLSFGFVPDYRHAVETVGESEGFGSSGRMDTGISTLDDSRAIKRKRISMNADGYDCFGAPLQVFSLSTLSRSERKDLELRLKLELEQVRLLQKRASNVSSNFAVSSSSNIQSSSDQHRGAPPETLNRLNEASVPPAKKQLVPSGRNGPSAKRSSSGRFESAKPAAVSASSTASLKQCEQLLQRLMSHTFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKSKLTAGEYTHPLDFAADVRLTFSNAMTYNPPANDVHTMAKTLSKFFEVRWKTIEKKFPTTTEEQRQVPSATTVPKEAESALPVPPPKKTKFPTNDPDVQPTSVVKVMTDQEKHKLSVELEALLGELPESIINFLKEHSSNSQAGEDEIEIDIDALSDDTLFALRKLLDDYMMEKQKCTKAEPCVVELHNESGFSNSSMPPSKGNDPIDEDVDILGGNDPPVSSYPPIEIEKDAVRRDSKCSNSSSSSSESGSSSSDSGTESLSGSESNAAKALESNVAPKEILCFETNVDQKQCELGDLEIGNYEENEIGLVDQTAEANTNTIEPDSYQEEGESAPSKRQVSPDRLYRAALLRNRFADTILKAREKALEKGDKRDPEKVRMEREELERQQREEKARLQAEAKAAEDARRKAEAEAAAEAKKKRELDREAARQALLKMEKTVDINENSQFMEDLEMLRASNDELLPNFTEESSPEHSQNGFGSFKLQGSNPLEQLGLYMKVDEEDEEEESEPPQSVNKAANDVEEGEID* 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 433234 440378 + CsaV3_1G000730.1 Csa01g00073 514570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00073 781 Gene3D - 355 431 IPR038336 -
Csa01g00073 781 PANTHER TRANSCRIPTION FACTOR GTE10 25 765 - -
Csa01g00073 781 MobiDBLite consensus disorder prediction 714 781 - -
Csa01g00073 781 PANTHER TRANSCRIPTION FACTOR GTE8 25 765 - -
Csa01g00073 781 Coils Coil 633 681 - -
Csa01g00073 781 MobiDBLite consensus disorder prediction 444 525 - -
Csa01g00073 781 Coils Coil 106 126 - -
Csa01g00073 781 Pfam Bromodomain extra-terminal - transcription regulation 360 421 IPR027353 -
Csa01g00073 781 ProSiteProfiles Bromodomain profile. 217 289 IPR001487 GO:0005515
Csa01g00073 781 CDD Bromo_plant1 206 303 IPR037377 -
Csa01g00073 781 MobiDBLite consensus disorder prediction 134 152 - -
Csa01g00073 781 MobiDBLite consensus disorder prediction 620 680 - -
Csa01g00073 781 Gene3D - 186 322 IPR036427 GO:0005515
Csa01g00073 781 PRINTS Bromodomain signature 220 233 IPR001487 GO:0005515
Csa01g00073 781 PRINTS Bromodomain signature 236 252 IPR001487 GO:0005515
Csa01g00073 781 PRINTS Bromodomain signature 252 270 IPR001487 GO:0005515
Csa01g00073 781 PRINTS Bromodomain signature 270 289 IPR001487 GO:0005515
Csa01g00073 781 SUPERFAMILY Bromodomain 185 311 IPR036427 GO:0005515
Csa01g00073 781 MobiDBLite consensus disorder prediction 134 194 - -
Csa01g00073 781 MobiDBLite consensus disorder prediction 492 525 - -
Csa01g00073 781 Pfam Bromodomain 209 293 IPR001487 GO:0005515
Csa01g00073 781 MobiDBLite consensus disorder prediction 717 742 - -
Csa01g00073 781 ProSiteProfiles NET domain profile. 350 431 IPR027353 -
Csa01g00073 781 MobiDBLite consensus disorder prediction 310 352 - -
Csa01g00073 781 SMART bromo_6 198 308 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00073 - - - csv:101217420 1326.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00073 Csa-Chr1:433234 Csa06g02375 Csa-Chr6:21278927 1.55E-45 dispersed
Csa07g01101 Csa-Chr7:10640198 Csa01g00073 Csa-Chr1:433234 3.23E-13 dispersed
Csa04g00837 Csa-Chr4:5858584 Csa01g00073 Csa-Chr1:433234 2.07E-47 transposed
Csa04g01168 Csa-Chr4:10111427 Csa01g00073 Csa-Chr1:433234 3.55E-51 transposed
Csa05g01764 Csa-Chr5:21030099 Csa01g00073 Csa-Chr1:433234 8.06E-27 transposed
Csa06g01577 Csa-Chr6:13298905 Csa01g00073 Csa-Chr1:433234 4.57E-44 transposed
Csa06g03741 Csa-Chr6:29842298 Csa01g00073 Csa-Chr1:433234 2.21E-14 transposed
Csa07g00643 Csa-Chr7:4626201 Csa01g00073 Csa-Chr1:433234 1.27E-46 transposed
Csa01g00073 Csa-Chr1:433234 Csa03g02520 Csa-Chr3:23607465 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00073 Csa_Chr01 FPKM 6.098591 10.262563 22.771652 25.524048 6.809488 3.408997 6.290997 4.045089 4.034872 3.313601