Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00074 ATGGACGGTGAGGATCGACGTCCGCAACCGAACTCACGTAATATTATAAGATCAGATAAGTCCCAAAATTTTAATACAAAACTTCATCCATTCCTCTTATGGAATGGAAAAATTATTATCTCGTTCCCGCTGCAAAGCTCACTACAATCTTTTCTAATGCAAACTCTCTTAAACCCTTCTCATTTCTTCACCTTCCCCAATCTCCCAACCTCTCGAAACTCCAATTCTCCTCATTCTTCCTTTCAATGGCGTCCTCTCCTCTGTCCACCGCTTACTCTTCCAGGCAACTTCAGTGTAAAATGCTTCAGCTCAGACGAGTTCCCAGTGGACGAGTCCTTCCTCGAGAAATTTGGTCCAAAAGACGAAGAAACAGAGGACCAAGCTCGTAAGCGTAACTGGGTTGAGCGTGGTTGGGCTCCTTGGGAAGAAGTTTTCACTCCAGAAGCTGATTTTGCGCGGAAGAGTTTGAATGAAGGCGAGGAAGTGCCGCTTCAGACGCCTGAAGCTATTGAAGCTTTCAAAATGTTGAGCCCGAAGTACCGGAAGCAGAAGATGGAGGAAATGGGGTTGACGGAGGATGACTATTACCGCACGCAATGCGAGATTAAAGGTGAGATACCGGAGCCTCTTGAGACGACGTGGACTAGGCCGCTGGTTCTTCAAGTTGTTCCTCCACGGGACTGGCCTCCGAGGGGATGGGATGTTGATAGAGAAGAGCTGGAGTTTATTAGGGGCGCGCACAAATTGCAAGCTGTGAGAGTGGACTTGGATCGGCTTGAGAAAGATGTGAGGACGGATACTGAAGATCTGTGCTTGGACAGATACAAAGTGTTTTTGAAACAGTACAAGGAGTGGGTTGCTGCGAATAAAGATAGATTGGAAGAGGAGTCCTACAAGTACGACCAAGATTATCATCCTGGTAGGAGGAAAAGAGGGAAGGACTATAAAGAAGGCATGTATGAGCTTCCGTTTTATTATCCAGGACAAATCTGTGAAGGAAAAGTCACTACTTTACACCTTTACCAAGGGGCTTTTGTTGATATAGGAGGTGTATATGATGGGTGGGTTCCCATAAAAGGTAATGATTGGTATTGGATTCGTCATCACATAAAAGTTGGTATGCCTGTGATCGTAGAGATTCTGGCAAAGCGAGATCCCTACCGGTTTCGATTCCCTATTGAAATGCGTTTTGTTCATCCTAATATAGATCACTTAATCTTCAATAGATTTGACTACCCACCAATATTCCACCGCGATGAGGACGATAATCCAGATGAAGTGCGGCGTGATTGTGGAAGACCTCCTATTCCTAGAAAAGATCCGGGTATTAAACCAGAAGATGAAACCTTATTGTCAAACCATCCATACGTTGAGAAGCTGTGGCAGATACACGTTGCGGAACAAATGATTTTGGATGATTGGGAGATGAATCCTGATAAATATAGGGACAAAAAACTTTCAGAGTTGTCTGATGAAGAAGATTTTGATGAAGAAAACAGTATTGAATATACCAAAGTACGTTATAAAAACAGCTTATTACCAAAGAAGATTCTGAAAACAAGTGTCAAAGAACTTGATTTGGAAGCGGCCTTGTCTGAGCGTCAAGTTCACAATAAACTAAGACAAGAAGCACAGGAGAGAGGAGAGGACTACAAAATTACAAAATTAAGACGGAATCTTGAAATGGATGAATATGACCTCATGCATTGGCGTAGATCTTTCGAGGAAAGAGAAGCATTAATCAGAGATATCAGTTGCCGACAAGCTCTTGGTCTCCCTCTGGAAGAACCTGGAAGATATGTAGATGCTAGTTACTTCGGGAAGGATCAATATGACCCATCAAACCCTCTCTATCGTTACGACTACTGGGGTGAACCCAAGAATTCAGAGAAGAGCAAACAAGAACGGATGACAGATGCCCACAACAAATCTATAGTAGGGAAAGGTGTTGTTTGGTATGAAATGTCATACGAGGATGCAATTAAGGAGCAGATGGAAAGAGAAGCTTCTCCAAAAGTCGCAGAAGAAGATGATACAGACGAGGATGACGACGACGACGACGACTTTGATTTCAGTATTTTACAGGACTCATCAGTAGATGAATTTCCAACACAGCCTCATGTGAATGGGACTGAATCATCTAGAATATCAGATGAGGGTATGTTTGAGGATTAG 2175 43.22 MDGEDRRPQPNSRNIIRSDKSQNFNTKLHPFLLWNGKIIISFPLQSSLQSFLMQTLLNPSHFFTFPNLPTSRNSNSPHSSFQWRPLLCPPLTLPGNFSVKCFSSDEFPVDESFLEKFGPKDEETEDQARKRNWVERGWAPWEEVFTPEADFARKSLNEGEEVPLQTPEAIEAFKMLSPKYRKQKMEEMGLTEDDYYRTQCEIKGEIPEPLETTWTRPLVLQVVPPRDWPPRGWDVDREELEFIRGAHKLQAVRVDLDRLEKDVRTDTEDLCLDRYKVFLKQYKEWVAANKDRLEEESYKYDQDYHPGRRKRGKDYKEGMYELPFYYPGQICEGKVTTLHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMPVIVEILAKRDPYRFRFPIEMRFVHPNIDHLIFNRFDYPPIFHRDEDDNPDEVRRDCGRPPIPRKDPGIKPEDETLLSNHPYVEKLWQIHVAEQMILDDWEMNPDKYRDKKLSELSDEEDFDEENSIEYTKVRYKNSLLPKKILKTSVKELDLEAALSERQVHNKLRQEAQERGEDYKITKLRRNLEMDEYDLMHWRRSFEEREALIRDISCRQALGLPLEEPGRYVDASYFGKDQYDPSNPLYRYDYWGEPKNSEKSKQERMTDAHNKSIVGKGVVWYEMSYEDAIKEQMEREASPKVAEEDDTDEDDDDDDDFDFSILQDSSVDEFPTQPHVNGTESSRISDEGMFED* 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 433361 446871 - CsaV3_1G000740.1 Csa01g00074 514571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00074 724 SUPERFAMILY Nucleic acid-binding proteins 324 383 IPR012340 -
Csa01g00074 724 ProSiteProfiles S1 domain profile. 328 396 IPR003029 GO:0003676
Csa01g00074 724 MobiDBLite consensus disorder prediction 675 694 - -
Csa01g00074 724 Gene3D - 325 396 IPR012340 -
Csa01g00074 724 MobiDBLite consensus disorder prediction 664 724 - -
Csa01g00074 724 MobiDBLite consensus disorder prediction 697 716 - -
Csa01g00074 724 Coils Coil 527 547 - -
Csa01g00074 724 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 10 94 710 IPR044967 GO:0000427|GO:0003723
Csa01g00074 724 MobiDBLite consensus disorder prediction 421 448 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00074 - - - csv:101217647 1370.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g156 . . Bda06g00739 . . . . Bma12g01073 . . Cma10g00074 . Car10g00064 . Sed08g0047 . . Bhi02g00547 Tan09g2351 Cmetu02g1227 . Hepe09g0066 . . Cla06g01727 Cam06g1917 Cec06g1967 Cco06g1971 Clacu06g1873 Cmu06g1815 Cre06g2630 . . . Cone19ag0195 . . . . . Blo15g00218 . . Bpe07g00880 . . . . Cmo10g00073 . . . . . . . . . . . . . . . . . . . . . Lsi06g01622 Csa01g00074 Chy02g02645 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011208 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00074 Csa_Chr01 FPKM 1.637856 1.668436 0.185321 0.087678 0.698103 0.303188 0.468054 0.0 0.0 0.0