Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00080 ATGAAGAAGAAAGTAACAGCAAGCACCATAATTCTTCTTTCACTTTTACTTTCTCTTCAAGAAGTTGTTCATTTTGCTTTCTCTTTACCTCCTTCACACAACAATCAGGACGAGGAGCAATCTGCGACTTTGAGACCTCTTGAGCAAAACGAAGAGCATGTTGACGAGGTTCATTGTTCCAGAGAAAGAAGCAGGACAGCCTGGAATATTATTGAGGAGCATTTACTGCCGTTTATGGAGAAAGAAAATTATGAGGTTTCCACCCAGTGTAGGCTTCATCCGAACAATGATCTCTTCAGAGATCAGGAACAGCACAAGATTCATCTTGATATAAATCATTGGCAGTGTGGATACTGTCGTAAAAGCTTTCGTGCTGAAAAATTTCTCGATAAGCATTTTGACAACAGACACAGCAATCTTCTGAATGTTAGCCACGGGAAGTGCTTGGCTGATTTATGTGGGGCATTACATTGTGACCTAAAAATGGATATCAAGTCTCGTAAATCTAAATGCAAGCCTGCAGCTGCTGCTAGGAACAAGCATTTATGTGAGAGTCTTGCTGATAGCTGTTTTCCAATTAACGAGGGACCATCAGCAAACCGTCTTCATGAGTTGTTTCTTCACCAATTCTGTGGAGCTCATTCTTGCACTGGAAAACAAAAGCCATTTTCAAGAGGAGCAGCGAGGCAACCAGGCATATTTTACATGGCATCTTCAATATTGATTTTGATGCTGCTACCAATTTTCTATGTCATTGTCTATTTACACCGCAGAGAATCAAGAAATGGAATCGAAGTGCTGAAACGAATCTCAAAAGCTGGACGTAAAAACAAACCCTTGTAA 843 40.45 MKKKVTASTIILLSLLLSLQEVVHFAFSLPPSHNNQDEEQSATLRPLEQNEEHVDEVHCSRERSRTAWNIIEEHLLPFMEKENYEVSTQCRLHPNNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHSNLLNVSHGKCLADLCGALHCDLKMDIKSRKSKCKPAAAARNKHLCESLADSCFPINEGPSANRLHELFLHQFCGAHSCTGKQKPFSRGAARQPGIFYMASSILILMLLPIFYVIVYLHRRESRNGIEVLKRISKAGRKNKPL* 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 503860 512315 + CsaV3_1G000800.1 Csa01g00080 514577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00080 280 MobiDBLite consensus disorder prediction 33 56 - -
Csa01g00080 280 ProSitePatterns Zinc finger C2H2 type domain signature. 116 137 IPR013087 -
Csa01g00080 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 139 IPR013087 -
Csa01g00080 280 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 279 - -
Csa01g00080 280 PANTHER ZINC FINGER PROTEIN-RELATED 8 279 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00080 Csa-Chr1:503860 Csa03g02532 Csa-Chr3:23700124 8.36E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30601 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00080 - - csv:101218367 574.318