Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00088 ATGGGTGGTGTTACTTCTTCCATGGCTGCTAAATTCGCCTTCTTCCCTCCTAATCCACCCTCTTACAAGATTCTTAAAGACCAACCCACTGGTCTTCTTCTCTTGGACCCTTTTCCCCACCGTGAAAATGTCGATGTCTGGAAGCTTCCCACGCGTAAAGGCAATGAGATCGTTGCTGTTTACATCCGTTACCCTATGGCTACTTCCACGCTTCTTTATTCACATGGAAATGCTGCTGATGTTGGTCAGATGTATGAGCTCTTCATTGAGCTTAGCATCCATTTGCGCGTTAATCTTCTTGGGTACGATTACTCTGGATATGGGCAGTCCACTGGAAAGCCAAGTGAGCACAATACTTATGCAGATATTGAAGCTGCATACAAGTGTCTTGAGGAGAAGTATGGTGCTAAGCAAGAGGAAATAATCCTTTATGGTCAATCTGTTGGAAGTGGCCCAACTTTGGACCTTGCTGCACGTTTGCCCCGACTACGAGCAGTTGTCCTGCATAGTCCTATATTATCAGGATTGAGAGTCATGTATCCAGTGAAACGCACATACTGGTTTGACATCTATAAGAACATTGATAAAATACCATATGTTAAGTGCCCCGTGTTGGTAATTCATGGAACCTCCGACGACGTTGTTGATTTCTCTCACGGCAAACAGCTTTGGGAGTTGTGTCAAGAGAAATATGAACCCTTGTGGCTGAAAGGAGGAAACCATTGTGATCTTGAACTCTTCCCAGAATACATCAGGCATCTCAAGAAATTTGTAACCACCGTTGAGAGATCGCCTTCGCGAAGGAATGGTTCAAGGAAAAGCACAGACCGAATGGAGCAATCAAGAAGGAGCACAGATTGTTTTGAGGCCCCACGAAGGAGCACAGACAGGCGAGAGAAGCCTAGGAAAAGCGTTGATAGACTAGACAAATCGAGACCGCAAGGATACAAGTTCAACAACATCGAGAAGCTAGAGAAACTAAAAATCTCAATAGACCAAGTAGAGAGATCAAGAAGAAGTGTGGAATTCTATGAGAAACCAAGAAGAAGCATCGACCAACAGTTTGAAAAAGCTCGAAAGAGCGTCGATTGGTTGGATAGAATTCGTGCCGGGTAG 1116 44.62 MGGVTSSMAAKFAFFPPNPPSYKILKDQPTGLLLLDPFPHRENVDVWKLPTRKGNEIVAVYIRYPMATSTLLYSHGNAADVGQMYELFIELSIHLRVNLLGYDYSGYGQSTGKPSEHNTYADIEAAYKCLEEKYGAKQEEIILYGQSVGSGPTLDLAARLPRLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKIPYVKCPVLVIHGTSDDVVDFSHGKQLWELCQEKYEPLWLKGGNHCDLELFPEYIRHLKKFVTTVERSPSRRNGSRKSTDRMEQSRRSTDCFEAPRRSTDRREKPRKSVDRLDKSRPQGYKFNNIEKLEKLKISIDQVERSRRSVEFYEKPRRSIDQQFEKARKSVDWLDRIRAG* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 531278 534858 - CsaV3_1G000880.1 Csa01g00088 514585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00088 371 SUPERFAMILY alpha/beta-Hydrolases 5 259 IPR029058 -
Csa01g00088 371 Pfam Serine aminopeptidase, S33 70 175 IPR022742 -
Csa01g00088 371 Coils Coil 120 140 - -
Csa01g00088 371 MobiDBLite consensus disorder prediction 262 313 - -
Csa01g00088 371 PANTHER ALPHA/BETA-HYDROLASE SUPERFAMILY PROTEIN 1 316 - -
Csa01g00088 371 Gene3D alpha/beta hydrolase 42 260 IPR029058 -
Csa01g00088 371 PANTHER ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 1 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00088 K01076 ABHD17; abhydrolase domain-containing protein 17 [EC:3.1.2.22] - csv:101220027 748.429
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00088 Csa-Chr1:531278 Csa05g01872 Csa-Chr5:21959814 0 dispersed
Csa01g01859 Csa-Chr1:15621563 Csa01g00088 Csa-Chr1:531278 8.38E-130 transposed
Csa01g02961 Csa-Chr1:25979627 Csa01g00088 Csa-Chr1:531278 6.46E-11 transposed
Csa03g00132 Csa-Chr3:1012745 Csa01g00088 Csa-Chr1:531278 4.05E-119 transposed
Csa04g01857 Csa-Chr4:18305909 Csa01g00088 Csa-Chr1:531278 2.31E-156 transposed
Csa06g02202 Csa-Chr6:19855922 Csa01g00088 Csa-Chr1:531278 2.77E-143 transposed
Csa01g00088 Csa-Chr1:531278 Csa03g02534 Csa-Chr3:23714362 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g872 . . . . Bpe12g00679 . . Bma12g01282 . . Cma10g00080 Cma11g00058 Car10g00071 Car11g00052 Sed08g0062 . . Bhi02g00575 Tan09g2328 Cmetu02g1969 . Hepe09g0082 . . . . . . . . . . Cone16ag0060 . . . . . . Blo13g00157 . . . Bpe07g01087 . . . . Cmo10g00080 Cmo11g00060 . . . . . Cpe18g00881 . . . . . . . . . . . . . . . Csa01g00088 Chy02g02632 Cme02g02031
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000437 3 6 3 3 4 4 5 4 4 4 3 4 5 4 4 4 4 6 3 4 4 4 4 4 4 2 4 6 4 4 121
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00088 Csa_Chr01 FPKM 15.380964 17.897552 15.541032 15.439834 14.41206 13.890773 13.937218 21.318132 20.856302 22.661308