Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00089 ATGAATCACGGTTTCTTCTCAAACATGCAGGAAAAAATGCCAATGGCACGGGAAACGACGCCGCTTAGAATAGCCACACTCACAACTCCAAACACCGCGACCTGCTTGGCCGCCCATAACGGCCTCCTCTACTCCGGCGCCACCAACCAAATCACCGTCTTCGATATAACCAACCATTTCACTCAAATCGACACTCTTTGCGTAAACGACGCTGCTTCGGGGTCCGTTAAATCCATCGCATTTGGGCCTTGGAAAGTCTTCACGGCTCATCAGGACTGCAAGATCAGAGTATGGAAGGTCACACGCTCGGGACCGCCATGTCACCGGCTTCTGGCTACTCTCCCCACCGTTAAAGACCGGCTGTACCGGTTTATTTCGCCGCGGAATTATGTTCATGTACGGCGACACCGTAAGCGGCTGTGGATTGAGCATTGGGATGCGGTTTCTGGGGTGGTGGTTAATGGAGGATTTGTGTACTCTGTTTCATGGGATCGGAGTTTAAAGGTTTGGAGTGCTTCTGACCATAAGTGTTTGTTGTCTGTCAAAGCTCACGAGGATGCAGTCAACGCTGTTGCTGTAGGGCAGAACGGCGTCGTGTATACTGGCTCTGCTGATGGGGTTATTGGAGTTTGGGAGGTCAGGGAGGGGAAGAAGAAGAAGAAGTATACGTTGGTTAGGACTTTGAACAACCACAAATCCACGGTAAACGCGATCGTACTAAACGAGGGAGGTCGGGCAATGTTTTCGGGGAGCAGTGATCGTTCGATAATGGTGTGGAAGAAAGAAGATGGTGGGAAGAAGATTTCGTTTGTGGAGGATTTATGGGGTCATCAAGGCGCTGTATTGTGCTTGTATACTTTTCGAGACTTATTAGTTAGTGGGTCGGAAGATAGGACACTCAGGATTTGGAGAGGTGATGTTACAAATGGTTACCGATGTACGACTGTGGTCGATGGACACAGGTCGCCGGTGAAGTCGTTGGTTTTGGTTTCCGTCGAAGATGGTGAACGGAGTTTGATGATCTGTAGTGCTAGCTTGGATGGAGAAATACGAGTTTGGAGTTCCAAGCTTTGA 1074 49.53 MNHGFFSNMQEKMPMARETTPLRIATLTTPNTATCLAAHNGLLYSGATNQITVFDITNHFTQIDTLCVNDAASGSVKSIAFGPWKVFTAHQDCKIRVWKVTRSGPPCHRLLATLPTVKDRLYRFISPRNYVHVRRHRKRLWIEHWDAVSGVVVNGGFVYSVSWDRSLKVWSASDHKCLLSVKAHEDAVNAVAVGQNGVVYTGSADGVIGVWEVREGKKKKKYTLVRTLNNHKSTVNAIVLNEGGRAMFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGDVTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVWSSKL* 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 541500 542985 + CsaV3_1G000890.1 Csa01g00089 514586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00089 357 Pfam WD domain, G-beta repeat 224 260 IPR001680 GO:0005515
Csa01g00089 357 Pfam WD domain, G-beta repeat 312 354 IPR001680 GO:0005515
Csa01g00089 357 Pfam WD domain, G-beta repeat 176 211 IPR001680 GO:0005515
Csa01g00089 357 Pfam WD domain, G-beta repeat 276 303 IPR001680 GO:0005515
Csa01g00089 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 303 IPR001680 GO:0005515
Csa01g00089 357 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 357 - -
Csa01g00089 357 Gene3D - 221 356 IPR015943 GO:0005515
Csa01g00089 357 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 23 354 - -
Csa01g00089 357 SMART WD40_4 310 354 IPR001680 GO:0005515
Csa01g00089 357 SMART WD40_4 221 260 IPR001680 GO:0005515
Csa01g00089 357 SMART WD40_4 267 304 IPR001680 GO:0005515
Csa01g00089 357 SMART WD40_4 174 212 IPR001680 GO:0005515
Csa01g00089 357 SMART WD40_4 127 171 IPR001680 GO:0005515
Csa01g00089 357 SMART WD40_4 20 55 IPR001680 GO:0005515
Csa01g00089 357 SMART WD40_4 62 99 IPR001680 GO:0005515
Csa01g00089 357 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Csa01g00089 357 PRINTS G protein beta WD-40 repeat signature 291 305 IPR020472 -
Csa01g00089 357 PRINTS G protein beta WD-40 repeat signature 341 355 IPR020472 -
Csa01g00089 357 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 217 - -
Csa01g00089 357 CDD WD40 34 354 - -
Csa01g00089 357 ProSitePatterns Trp-Asp (WD) repeats signature. 199 213 IPR019775 -
Csa01g00089 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 357 IPR001680 GO:0005515
Csa01g00089 357 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 228 260 - -
Csa01g00089 357 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 303 - -
Csa01g00089 357 SUPERFAMILY WD40 repeat-like 42 354 IPR036322 GO:0005515
Csa01g00089 357 Gene3D - 16 109 IPR015943 GO:0005515
Csa01g00089 357 Gene3D - 110 220 IPR015943 GO:0005515
Csa01g00089 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 260 IPR001680 GO:0005515
Csa01g00089 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 221 IPR001680 GO:0005515
Csa01g00089 357 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 23 354 IPR045182 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00089 - - - csv:101204201 725.317
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00089 Csa-Chr1:541500 Csa05g02258 Csa-Chr5:25225144 4.79E-111 dispersed
Csa01g02285 Csa-Chr1:20001370 Csa01g00089 Csa-Chr1:541500 5.34E-15 dispersed
Csa01g00089 Csa-Chr1:541500 Csa03g04173 Csa-Chr3:36627485 4.03E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g871 . . . . . Bpe13g00263 . . . . . . . . . . . Bhi02g00576 Tan09g2327 Cmetu02g1365 . . . . Cla06g01714 . . Cco06g1956 . . Cre06g2615 . . . . . . . . . . . . . . . . . Cmo10g00081 . . . . . . . . . . . . . . Cla01g01398 Cam01g1460 Cec01g1499 . Clacu01g1484 Cmu01g1379 Cre01g1294 . Csa01g00089 Chy02g02631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00089 Csa_Chr01 FPKM 13.723402 15.537013 11.876639 14.416289 11.378431 13.31091 11.948732 18.852743 19.854748 20.35191