Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00091 ATGCCTTCACCTTCACCTTCACCTTCACCTTCCTCCAAACTCCTTCCCTTCTTGGCTTTTCTCTCCATCGTTCTCCATGTCCATGCCGGTCTGAATCTTGATCCTTCAGATCTCAGAGCCTTTTCTATCATAAAAAACGACTTGGGCATTGACGGTCAACTCTCCTCTTCACCATGCCACAACGCCGGCGTGTTCTGCGAGCGGCGGCTCTCCAACAACGGCACTTATGTTTTGAGGATCACCAGGCTTATTTTCAACTCCAAAGGTCTCTCTGGTTCTCTTTCTCCGGCTATCGGCAGGCTCACGGAGTTGAAAGAGCTTACGGTATCCAATAATCACCTCGTTGACCAAGTACCTTACCAAATCGTTGACTGCCAGAAACTGGAAATTCTCGATCTCCAAAACAACCAATTTTCTGGAGAAGTTCCATCGGGATTGTCCACGTTGATTCGTCTTCGAGTCATTGATCTTTCCTCCAATAAATTCTCGGGGAGTTTGGATTTCTTGAAGTATTTCCCCAACTTGGAAAGTCTTTCCATTGCCAATAATTACTTTACAGGGAAGATTCCCGCTTCAATTCGTTCTTTTCGTAACCTTCGAGTCTTCAACTTCTCCGGAAATCGCCTTCTCGAAAGCTCAACCTCTATACTGAAAGATGTTGAGTTCTACTCGGCTACTGAAGTTCCCAAGCGTTATATGTTAGCTGAAAATTCCAGTACGAACGGCAAGCAAAGAGCCACCGCCCCCGCCACATCGCCGACTTCGAGCGCTCAAGCTCCAAATGCCGCACCTGTCCATAAGAATCGGAAAAATAAAGCAAAGAAGATAGCTTCTTGGATACTTGGGTTCATCGCTGGAGCAATTGCTGGAAGTTTGTCAGGATTTATCTTTTCTCTACTGTTTAAACTCGTAATAGCAGCTATAAAAGGAGGAAGCAAGAATTCCGGTCCATCAATCTTTGCTCCTAAACTGATAAAACGAGATGATTTGGCTTTTCTAGAGAGAGACAATGCGCTTGCATCGCTGCAGCTGATTGGAAAAGGTGGATGTGGAGAAGTTTACAAGGCTGAATTACCAGAAAAAAGTGGGAAAATGTTTGCGATAAAGAAGATAACTCAACCCCCAAAGGATGCAGCGGAGTTAATCGAAGAGGAAAGCAGGCATATGAGCAAGAAAATGCGTCAAATCAAGTCGGAGATCAGGACCGTGGGTGAAATCAGGCACCGGAATCTTCTTCCTCTTGTGGCACATGTTCCTCGTCCTGATTGTCACTACCTTGTGTATGAATTGATGAAGAATGGTAGCTTGCAAGATATGTTGAATCAGGTTTCGGCAGGAGTGAAAGAACTAGATTGGCTTACTCGGCATAACATTGCCCTCGGAGTCGCATCTGGGTTGGAGTATCTTCACATGAACCATACCCCACGTATTATTCACAGAGATCTAAAGCCTGCAAATGTTTTGCTTGATGATGGCATGGAAGCTCGAATTGCCGATTTTGGGCTGGCAAAAGCAATGCCAGATGCCCAAACTCACATGACAGCTTCAAATGTTGCTGGTACCGTAGGATACATCGCACCGGAGTATCACCAGACATTGAAATTTACTGATAAATGTGACATATACGGCTTTGGGGTTCTGTTAGGTGTCTTGGTGATTGGGAAACTTCCATCTGATGAATTTTTCCAGAACACGGATGAGATGAGTTTGGTTAAGTGGATGAAGAATGTTATGACTTCTGATAATCCTAGAGGAGCAATTGATCCGAAGCTCCTGGGGAATGGCTGGGAGGAACAAATGCTTTTGGCCCTGAAAATTGCCTGCTTCTGCACTATGGATAATCCAAAAGAGAGGCCTAACAGTAAGGATGTTAGATGCATGCTGTCACAGATCAAGCACGATGTACCTGAAACTCCCTCTGAATGTGTCTAG 1932 44.98 MPSPSPSPSPSSKLLPFLAFLSIVLHVHAGLNLDPSDLRAFSIIKNDLGIDGQLSSSPCHNAGVFCERRLSNNGTYVLRITRLIFNSKGLSGSLSPAIGRLTELKELTVSNNHLVDQVPYQIVDCQKLEILDLQNNQFSGEVPSGLSTLIRLRVIDLSSNKFSGSLDFLKYFPNLESLSIANNYFTGKIPASIRSFRNLRVFNFSGNRLLESSTSILKDVEFYSATEVPKRYMLAENSSTNGKQRATAPATSPTSSAQAPNAAPVHKNRKNKAKKIASWILGFIAGAIAGSLSGFIFSLLFKLVIAAIKGGSKNSGPSIFAPKLIKRDDLAFLERDNALASLQLIGKGGCGEVYKAELPEKSGKMFAIKKITQPPKDAAELIEEESRHMSKKMRQIKSEIRTVGEIRHRNLLPLVAHVPRPDCHYLVYELMKNGSLQDMLNQVSAGVKELDWLTRHNIALGVASGLEYLHMNHTPRIIHRDLKPANVLLDDGMEARIADFGLAKAMPDAQTHMTASNVAGTVGYIAPEYHQTLKFTDKCDIYGFGVLLGVLVIGKLPSDEFFQNTDEMSLVKWMKNVMTSDNPRGAIDPKLLGNGWEEQMLLALKIACFCTMDNPKERPNSKDVRCMLSQIKHDVPETPSECV* 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 545619 547550 - CsaV3_1G000910.1 Csa01g00091 514588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00091 643 Gene3D Ribonuclease Inhibitor 165 222 IPR032675 -
Csa01g00091 643 Pfam Protein kinase domain 342 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00091 643 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 12 633 - -
Csa01g00091 643 Gene3D Transferase(Phosphotransferase) domain 1 431 640 - -
Csa01g00091 643 MobiDBLite consensus disorder prediction 236 269 - -
Csa01g00091 643 Pfam Leucine Rich Repeat 174 195 IPR001611 GO:0005515
Csa01g00091 643 Gene3D Phosphorylase Kinase; domain 1 331 430 - -
Csa01g00091 643 SUPERFAMILY L domain-like 77 213 - -
Csa01g00091 643 MobiDBLite consensus disorder prediction 236 262 - -
Csa01g00091 643 Coils Coil 379 399 - -
Csa01g00091 643 Gene3D Ribonuclease Inhibitor 36 164 IPR032675 -
Csa01g00091 643 SMART serkin_6 339 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00091 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Csa01g00091 643 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
Csa01g00091 643 SUPERFAMILY Protein kinase-like (PK-like) 338 632 IPR011009 -
Csa01g00091 643 ProSiteProfiles Protein kinase domain profile. 339 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00091 643 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 12 633 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00091 Csa-Chr1:545619 Csa03g02633 Csa-Chr3:24824322 1.02E-06 dispersed
Csa01g00091 Csa-Chr1:545619 Csa03g04526 Csa-Chr3:39463518 3.11E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77729 PF00069 Pkinase 1.50E-41 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00091 - - csv:101220500 1229.54