Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00094 ATGGCTTCTTCTTCAGCCACTTCCCTTTTCAAGCCTTTATCCAAGCCGGATTCTTGCTTTCTCTCTTTACCTTCTCTATTCACCGGCAGACCCCCACATACTTTCCTCTCTTTCCCTTCAAAATTCATCCCCTTTCATCTTTCCTCTTCGTCTTCCTATTCTTCAGGCTTTTCCCCTTCGAAGAAGAAACCCCATCTTCCCTCTGTAGCTCAAACTTCCGACTGGGCTCAAGAAGATGACACTATCACCATTGACCCAAAACTCGACAACGACGAAAATGGGGGAGAAGAAGGCGGCCCCCATTGGGAAAATGAAGAGCTCAGTGAAACTGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGTGAAGATGGAGGAAGTGAGGCTGAAGTAGGAGGAGATGAAGAAGAAGACGAAGAAGGGGAACAAGGACCTTATGAAGAGCCAAACGAAGATGCTAAATTGTTTGTTGGGAATTTGCCTTATGATATTGACAGTGAAAAGTTAGCAATGCTCTTTGAGAAGGCTGGAACCGTGGAGATTGCTGAGGTTATTTACAACAGAGAAACAGATCGGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCCGAGAAAGCTGTGGATACCTTCAACCGTTATGATTTATCCGGGAGGCTATTGACTGTTAATAAGGCTGCTCCAAGAGGTTCAAGGCAAGAACGCGAACCTCGACCATTCCAACCCACTTTCAGAATCTATGTAGGCAATCTTCCATGGGATGTAGACAATGGACGCTTGGAGCAACTCTTTAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTTTATGACCGAGACAGTGGCCGTTCTCGAGGCTTTGGCTTTGTGACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTCTAGATGGAAGGGCAATCAGAGTAAATGTTGCTGAGGAAAGACCAAGGCGCAACTTCTGA 993 46.02 MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGEGEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF* 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 557862 561197 - CsaV3_1G000940.1 Csa01g00094 514591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00094 330 MobiDBLite consensus disorder prediction 49 152 - -
Csa01g00094 330 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 246 324 IPR000504 GO:0003723
Csa01g00094 330 MobiDBLite consensus disorder prediction 121 145 - -
Csa01g00094 330 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 248 318 IPR000504 GO:0003723
Csa01g00094 330 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 223 IPR000504 GO:0003723
Csa01g00094 330 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 230 IPR000504 GO:0003723
Csa01g00094 330 PANTHER RIBONUCLEOPROTEIN 1 329 - -
Csa01g00094 330 CDD RRM_HP0827_like 153 230 - -
Csa01g00094 330 Gene3D - 84 235 IPR012677 -
Csa01g00094 330 MobiDBLite consensus disorder prediction 49 79 - -
Csa01g00094 330 SMART rrm1_1 247 320 IPR000504 GO:0003723
Csa01g00094 330 SMART rrm1_1 153 226 IPR000504 GO:0003723
Csa01g00094 330 MobiDBLite consensus disorder prediction 80 120 - -
Csa01g00094 330 Gene3D - 236 330 IPR012677 -
Csa01g00094 330 PANTHER OS02G0815200 PROTEIN 1 329 - -
Csa01g00094 330 CDD RRM_HP0827_like 247 323 - -
Csa01g00094 330 SUPERFAMILY RNA-binding domain, RBD 240 328 IPR035979 GO:0003676
Csa01g00094 330 SUPERFAMILY RNA-binding domain, RBD 147 240 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00094 - - - csv:101221130 597.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00094 Csa-Chr1:557862 Csa03g03277 Csa-Chr3:29938431 8.57E-60 dispersed
Csa02g01687 Csa-Chr2:16096302 Csa01g00094 Csa-Chr1:557862 1.62E-08 dispersed
Csa05g00687 Csa-Chr5:4589674 Csa01g00094 Csa-Chr1:557862 5.13E-15 dispersed
Csa05g02783 Csa-Chr5:28475979 Csa01g00094 Csa-Chr1:557862 7.42E-09 dispersed
Csa01g00094 Csa-Chr1:557862 Csa07g02046 Csa-Chr7:19815206 4.26E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008467 1 1 2 1 1 1 2 1 1 0 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00094 Csa_Chr01 FPKM 17.499241 16.957657 69.46109 66.146736 16.041954 13.310979 17.768267 1.646166 1.983971 1.542392