Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00099 ATGGAAGCTCTGGCGCTTCCTTCCCTGAATTCACTCACCATTTCTTGTTCTAATTTGAAGAAAGGGAGCTTTTCCAACCTCCCCAGAAGCTTAAATCACTCTAAATTTTACGAACAATCCACCTTAAAGTTCAGCCCCCTTCATGGTACCTACCGCCGTCGTTTCAATGTTGTCAAAATGCAAAGTGATAGTGAAGACTATGAGCTGAAGCAAATGAGGGATATGGCTGCAGCTAAAAAGAGATGGGATTCTCTGATCCGAGAAGGCAAAGTGAAAGTCTTGATGCCAAGGGAAGCTGGTTATGCCGTTCAGCTCTCTGATAAGACATTGGTTGATGTGCGTCCTTCTATAGAACACAAAAAGGCATGGGTTAAAGGCTCAACATGGATCCCTATCTTTGAGGTTGATGACAAACTTGATGCTGGAACTCTTTCTCGAAAGGTCACAAGCTTCATGATGGGGGGATGGTGGAGTGGGGTGCCTACAGTATCCTACAATAGCCGATTCTTATCAGAAGTTCAAGAGAAGTTTCCAAAAGATGCTGACCTTATTCTTGCATGCCAAAAGGGGTTGAGGTCCCTGGCTGCATGTGAAATCCTCTACAATGCTGGTTATAGAAACCTTTTCTGGGTTCAAGGCGGTCTAGATGCCGCTGAAGAAGAGGATCTTGTCCGAGAAGGTCCTCAACCATTGAAATTCGCTGGGATTGGTGGGCTTTCGGAATTCCTTGGTTGGACAGATCAACAAAGGATAGCTGGTGCAAAAGAGGGTTGGGGTTATCGCTTGGTTTACTCTGCTCGTTTGATTGCAGTCTTCATCGTTGCAGATGCCTTGTTTATTGGAGCCCAGCAATTGGGTCGCTATGTTCAGGAATTACGGTCTCACTGA 888 45.5 MEALALPSLNSLTISCSNLKKGSFSNLPRSLNHSKFYEQSTLKFSPLHGTYRRRFNVVKMQSDSEDYELKQMRDMAAAKKRWDSLIREGKVKVLMPREAGYAVQLSDKTLVDVRPSIEHKKAWVKGSTWIPIFEVDDKLDAGTLSRKVTSFMMGGWWSGVPTVSYNSRFLSEVQEKFPKDADLILACQKGLRSLAACEILYNAGYRNLFWVQGGLDAAEEEDLVREGPQPLKFAGIGGLSEFLGWTDQQRIAGAKEGWGYRLVYSARLIAVFIVADALFIGAQQLGRYVQELRSH* 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 576776 580721 + CsaV3_1G000990.1 Csa01g00099 514596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00099 295 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 98 218 IPR036873 -
Csa01g00099 295 Pfam Rhodanese-like domain 103 217 IPR001763 -
Csa01g00099 295 CDD RHOD 109 217 - -
Csa01g00099 295 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 11, CHLOROPLASTIC 1 294 IPR044664 -
Csa01g00099 295 ProSiteProfiles Rhodanese domain profile. 104 227 IPR001763 -
Csa01g00099 295 SMART rhod_4 94 224 IPR001763 -
Csa01g00099 295 Gene3D - 91 258 IPR036873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00099 - - - csv:101221836 594.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00099 Csa-Chr1:576776 Csa03g03072 Csa-Chr3:28913832 3.97E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g860 . . Bda06g00622 . . . . Bma12g01059 . . Cma10g00088 . Car10g00078 . . . . Bhi02g00594 . . . . . . Cla06g01706 Cam06g1894 Cec06g1943 Cco06g1947 Clacu06g1850 Cmu06g1791 Cre06g2606 . Cone16ag0063 . . . . . . . . . . . . . . . Cmo10g00089 . . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01599 Csa01g00099 Chy02g02624 Cme02g02022
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g01898 . 59 376 Sulfurtransferasese/Rhodanese AT1G79230 75.8 9.3e-147 516.5
Csa03g01898 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 74.0 1.5e-113 406.0
Csa01g00637 . 36 312 Sulfurtransferasese/Rhodanese AT5G23060 64.1 4.4e-85 311.6
Csa03g00816 . 1 443 Sulfurtransferasese/Rhodanese AT4G01050 52.3 1.2e-119 427.2
Csa01g01557 . 6 610 Sulfurtransferasese/Rhodanese AT1G09280 64.3 1.5e-227 785.8
Csa05g00911 . 18 379 Sulfurtransferasese/Rhodanese AT2G40760 74.7 6.5e-157 550.8
Csa03g03819 . 7 304 Sulfurtransferasese/Rhodanese AT1G17850 64.9 2.2e-122 436.0
Csa04g02104 . 41 239 Sulfurtransferasese/Rhodanese AT2G42220 73.9 6.2e-84 307.4
Csa03g03072 . 13 217 Sulfurtransferasese/Rhodanese AT3G08920 58.5 1.6e-65 246.1
Csa01g00099 . 1 296 Sulfurtransferasese/Rhodanese AT4G24750 68.1 4.7e-113 404.4
Csa06g02507 . 67 249 Sulfurtransferasese/Rhodanese AT5G19370 63.6 1.8e-64 243.0
Csa03g00490 . 113 461 Sulfurtransferasese/Rhodanese AT5G55130 72.2 1.1e-148 523.1
Csa03g01965 . 54 237 Sulfurtransferasese/Rhodanese AT4G27700 79.3 1.5e-79 292.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011200 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00099 Csa_Chr01 FPKM 0.420083 0.255225 0.42846 0.0 0.0 0.0 0.065571 0.0 0.205838 0.064304