Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00107 | ATGGAAGCTGGGAGTAGATTTTACTCTGCTACAGATGAGTTCAGATTGGAAGCCAAATGGTTGGTTGATCCCAAACATCTATTTGTTGGACCTAGAATTGGAGAGGGAGCCCATGCCAAAGTTTACGAGGGCAAATATAAGAACCAGACTGTTGCTATCAAAATTGTTCATAAAGGGGAAACAGTTGATGAGGTTGCAAAGAAAGAGGCTCGGTTTGCTCGTGAGGTTGCAATGTTGTCCAGAGTACAACATAAAAATCTTGTCAAGTTTATTGGTGCCTGCAAGGAGCCTGTAATGGTGATAGTAACCGAACTTTTATTAGGAGGGACCTTACGAAAGTACCTGCTCAACATGCGCCCACGGTGCTTGGACACACGTGTGGCAGTTGGTTTTGCACTTGATATTGCTCGTGCTATGGAATGCCTTCACTCACATGGCATCATACACCGTGATTTGAAGCCTGAGAACCTTCTGTTGACAGCAGACCACAAAACAGTTAAATTAGCTGATTTTGGTTTGGCAAGAGAAGAGTCGTTGACGGAGATGATGACTGCAGAGACAGGAACCTACCGTTGGATGGCTCCAGAGTTGTACAGCACTGTTACCCTAAGGCAAGGGGAGAAGAAACACTACAACCATAAAGTGGATGCCTATAGCTTTGCTATTGTGTTATGGGAACTGCTGCACAACAAGTTGCCATTTGAAGGCATGTCAAATCTTCAAGCAGCATATGCAGCTGCTTTTAAGAATGTAAGGCCTAGCGCAGAGAATCTTCCCGAGGAACTGGCTATCATTCTAACATCATGCTGGCAAGAGGATGCAAATGCTCGTCCAAATTTCTCCCAAATTATCCAAATGTTACTTAATTACCTTTATACTATTTCACCCCCTGAACCGGTGATTCCTTCCCGAATTTTCACTTCTGAGAACACGGTTTTTCCTCCTGAATCTCCTGGAACAAGCTCGCTGATGGCAGTCCGTGACGATTCAGGGGACACTCCCAAAGCTAAAATGGAAAATAATCCCAGAGGTTGTTTCTTCTGCTCCAATGACTGTTACTAA | 1062 | 44.26 | MEAGSRFYSATDEFRLEAKWLVDPKHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVHKGETVDEVAKKEARFAREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPRCLDTRVAVGFALDIARAMECLHSHGIIHRDLKPENLLLTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSAENLPEELAIILTSCWQEDANARPNFSQIIQMLLNYLYTISPPEPVIPSRIFTSENTVFPPESPGTSSLMAVRDDSGDTPKAKMENNPRGCFFCSNDCY* | 354 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 613749 | 617444 | + | CsaV3_1G001070.1 | Csa01g00107 | 514604 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00107 | 353 | Pfam | Protein tyrosine and serine/threonine kinase | 31 | 287 | IPR001245 | GO:0004672|GO:0006468 | |
Csa01g00107 | 353 | PRINTS | Tyrosine kinase catalytic domain signature | 103 | 116 | IPR001245 | GO:0004672|GO:0006468 | |
Csa01g00107 | 353 | PRINTS | Tyrosine kinase catalytic domain signature | 141 | 159 | IPR001245 | GO:0004672|GO:0006468 | |
Csa01g00107 | 353 | PRINTS | Tyrosine kinase catalytic domain signature | 215 | 237 | IPR001245 | GO:0004672|GO:0006468 | |
Csa01g00107 | 353 | PRINTS | Tyrosine kinase catalytic domain signature | 258 | 280 | IPR001245 | GO:0004672|GO:0006468 | |
Csa01g00107 | 353 | CDD | STKc_MAP3K-like | 33 | 287 | - | - | |
Csa01g00107 | 353 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 1 | 328 | - | - | |
Csa01g00107 | 353 | Gene3D | Transferase(Phosphotransferase) domain 1 | 108 | 295 | - | - | |
Csa01g00107 | 353 | MobiDBLite | consensus disorder prediction | 315 | 336 | - | - | |
Csa01g00107 | 353 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 316 | IPR011009 | - | |
Csa01g00107 | 353 | ProSitePatterns | Protein kinases ATP-binding region signature. | 33 | 54 | IPR017441 | GO:0005524 | |
Csa01g00107 | 353 | PANTHER | SERINE/THREONINE-PROTEIN KINASE HT1-LIKE | 1 | 328 | - | - | |
Csa01g00107 | 353 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 147 | 159 | IPR008271 | GO:0004672|GO:0006468 | |
Csa01g00107 | 353 | Gene3D | Phosphorylase Kinase; domain 1 | 15 | 106 | - | - | |
Csa01g00107 | 353 | ProSiteProfiles | Protein kinase domain profile. | 27 | 291 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00107 | 353 | SMART | serkin_6 | 27 | 291 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00107 | Csa-Chr1:613749 | Csa03g03981 | Csa-Chr3:34800785 | 1.38E-178 | dispersed | |
Csa01g00107 | Csa-Chr1:613749 | Csa05g01889 | Csa-Chr5:22098286 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77730 | PF07714 | PK_Tyr_Ser-Thr | 1.10E-57 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00107 | - | - | csv:101223021 | 712.99 |