Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00107 ATGGAAGCTGGGAGTAGATTTTACTCTGCTACAGATGAGTTCAGATTGGAAGCCAAATGGTTGGTTGATCCCAAACATCTATTTGTTGGACCTAGAATTGGAGAGGGAGCCCATGCCAAAGTTTACGAGGGCAAATATAAGAACCAGACTGTTGCTATCAAAATTGTTCATAAAGGGGAAACAGTTGATGAGGTTGCAAAGAAAGAGGCTCGGTTTGCTCGTGAGGTTGCAATGTTGTCCAGAGTACAACATAAAAATCTTGTCAAGTTTATTGGTGCCTGCAAGGAGCCTGTAATGGTGATAGTAACCGAACTTTTATTAGGAGGGACCTTACGAAAGTACCTGCTCAACATGCGCCCACGGTGCTTGGACACACGTGTGGCAGTTGGTTTTGCACTTGATATTGCTCGTGCTATGGAATGCCTTCACTCACATGGCATCATACACCGTGATTTGAAGCCTGAGAACCTTCTGTTGACAGCAGACCACAAAACAGTTAAATTAGCTGATTTTGGTTTGGCAAGAGAAGAGTCGTTGACGGAGATGATGACTGCAGAGACAGGAACCTACCGTTGGATGGCTCCAGAGTTGTACAGCACTGTTACCCTAAGGCAAGGGGAGAAGAAACACTACAACCATAAAGTGGATGCCTATAGCTTTGCTATTGTGTTATGGGAACTGCTGCACAACAAGTTGCCATTTGAAGGCATGTCAAATCTTCAAGCAGCATATGCAGCTGCTTTTAAGAATGTAAGGCCTAGCGCAGAGAATCTTCCCGAGGAACTGGCTATCATTCTAACATCATGCTGGCAAGAGGATGCAAATGCTCGTCCAAATTTCTCCCAAATTATCCAAATGTTACTTAATTACCTTTATACTATTTCACCCCCTGAACCGGTGATTCCTTCCCGAATTTTCACTTCTGAGAACACGGTTTTTCCTCCTGAATCTCCTGGAACAAGCTCGCTGATGGCAGTCCGTGACGATTCAGGGGACACTCCCAAAGCTAAAATGGAAAATAATCCCAGAGGTTGTTTCTTCTGCTCCAATGACTGTTACTAA 1062 44.26 MEAGSRFYSATDEFRLEAKWLVDPKHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVHKGETVDEVAKKEARFAREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPRCLDTRVAVGFALDIARAMECLHSHGIIHRDLKPENLLLTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSAENLPEELAIILTSCWQEDANARPNFSQIIQMLLNYLYTISPPEPVIPSRIFTSENTVFPPESPGTSSLMAVRDDSGDTPKAKMENNPRGCFFCSNDCY* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 613749 617444 + CsaV3_1G001070.1 Csa01g00107 514604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00107 353 Pfam Protein tyrosine and serine/threonine kinase 31 287 IPR001245 GO:0004672|GO:0006468
Csa01g00107 353 PRINTS Tyrosine kinase catalytic domain signature 103 116 IPR001245 GO:0004672|GO:0006468
Csa01g00107 353 PRINTS Tyrosine kinase catalytic domain signature 141 159 IPR001245 GO:0004672|GO:0006468
Csa01g00107 353 PRINTS Tyrosine kinase catalytic domain signature 215 237 IPR001245 GO:0004672|GO:0006468
Csa01g00107 353 PRINTS Tyrosine kinase catalytic domain signature 258 280 IPR001245 GO:0004672|GO:0006468
Csa01g00107 353 CDD STKc_MAP3K-like 33 287 - -
Csa01g00107 353 PANTHER SERINE-THREONINE PROTEIN KINASE 1 328 - -
Csa01g00107 353 Gene3D Transferase(Phosphotransferase) domain 1 108 295 - -
Csa01g00107 353 MobiDBLite consensus disorder prediction 315 336 - -
Csa01g00107 353 SUPERFAMILY Protein kinase-like (PK-like) 19 316 IPR011009 -
Csa01g00107 353 ProSitePatterns Protein kinases ATP-binding region signature. 33 54 IPR017441 GO:0005524
Csa01g00107 353 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 1 328 - -
Csa01g00107 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Csa01g00107 353 Gene3D Phosphorylase Kinase; domain 1 15 106 - -
Csa01g00107 353 ProSiteProfiles Protein kinase domain profile. 27 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00107 353 SMART serkin_6 27 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00107 Csa-Chr1:613749 Csa03g03981 Csa-Chr3:34800785 1.38E-178 dispersed
Csa01g00107 Csa-Chr1:613749 Csa05g01889 Csa-Chr5:22098286 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77730 PF07714 PK_Tyr_Ser-Thr 1.10E-57 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00107 - - csv:101223021 712.99