Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00112 ATGAACACTTTTCTTCTTCATCTTCTTCCTCCTTCTCTTCAACTCTCACTATATTCAATTTCCTTCACTGCTTTCATCCTCCTCCTCATCTTCCTCCTCCAGAAACGCCTTCTCTCCTCTTCACAATCTTCACCTCCATCTCCACCAGCAAAGATTCCAATCTTCGGCCATCTTCTCAGTCTCGGCTCCCTTCCCCATCTCACTCTCCAAAACTACGCTCGTCTCCATGGTCCTTTATTTCTCCTCCGCCTCGGCTCTGTTCCCACCCTCGTCGTTTCTTCCTCCGAACTCGCTCGCGATATCATGAAAACCCACGATCTCATCTTTGCAAACAGACCCAAATCAAGCATTAGCGACAAACTTCTCTACGGTTCCAGAGACGTCGCCGCTTCCCCTTACGGGGAGTACTGGCGACAGATGAAAAGCGTTTGCGTTCTTCATATGTTGAGCAACAAAAGGGTTCAATCCTTTCGTTGTGTAAGAGAAGAAGAGGTTAAATTGATGATTGAGAAGATTGAGCAGAACCCAGTTGGGGTGAATTTGACTGAGATTTTGTCTGGGTTGACGAACGATGTGGTTTGCAGAGTGGGTTTAGGGAGGAAATACAGAGTGGGAGAAGATGGAGTGAAGTTCATGAGTTTGTTAAAGAAATTTGGGGAATTATTGGGGAGTTTTAGTGTACGAGATTTCATTCCTTGGTTGGGTTGGATCGATTGGATTTCTGGGTTGGATGGTAAAGCAAACAGAATAGCGAAAGAGTTGGATGAGTTCTTTGACAGAGTGATTGAAGATCATATGAATCCAGAAAACAAAGAGATGAGGAATTTTGATGAGCAGAAGGATTTGGTTGATGTTTTGCTTTGGATACAGAGAGAAAACTCCATTGGTTTCCCCCTTGAGATGGAGAGCATCAAAGCTCTAATCTTGGACATGTTTGCAGCAGGAACAGACACAACTTACACAGTATTGGAATGGGCAATGTCAGAACTATTGAAACACCCAGAAGTCATGAAGAAACTGAAGAATGAAATCAGAGAAATAAAAGGTGAACACAAAGGAAGCTATGTAAATGAGGATGATCTAAACAAGATGGTATATCTTAAGGCAGTATTCAAAGAAACATTACGACTACACACACCCATCCCTCTTCTTGTCCCAAGAGAATCAATCAAACCAGTAAAATTAGGAGGGTACGATATCAAACCTGGAACTCGAGTTATGATCAATGCATGGACAATCGGGAGAGACCCAAAAGTATGGGAAGAAGCAGAGAAATTTCAACCAGAAAGATTCATGAACAGTTCGATAGATTTCAAAGGTCAAGATTTTGAGTTGATCCCATTTGGTGCAGGAAGAAGAGGATGTCCTGGAATTATGTTTGCAGCTATGGTTAGTGAGATAACTTTAGCAAATTTGGTGCATAAGTTTGAATGGATTTTGCCTAATGGGGAGGATTTGGACATGACAGGAGCCTTTGGGTTATCCATTCATAGAAAGTTTCCACTTGTGGCTACAGCAATTCCTTGTTAG 1530 42.42 MNTFLLHLLPPSLQLSLYSISFTAFILLLIFLLQKRLLSSSQSSPPSPPAKIPIFGHLLSLGSLPHLTLQNYARLHGPLFLLRLGSVPTLVVSSSELARDIMKTHDLIFANRPKSSISDKLLYGSRDVAASPYGEYWRQMKSVCVLHMLSNKRVQSFRCVREEEVKLMIEKIEQNPVGVNLTEILSGLTNDVVCRVGLGRKYRVGEDGVKFMSLLKKFGELLGSFSVRDFIPWLGWIDWISGLDGKANRIAKELDEFFDRVIEDHMNPENKEMRNFDEQKDLVDVLLWIQRENSIGFPLEMESIKALILDMFAAGTDTTYTVLEWAMSELLKHPEVMKKLKNEIREIKGEHKGSYVNEDDLNKMVYLKAVFKETLRLHTPIPLLVPRESIKPVKLGGYDIKPGTRVMINAWTIGRDPKVWEEAEKFQPERFMNSSIDFKGQDFELIPFGAGRRGCPGIMFAAMVSEITLANLVHKFEWILPNGEDLDMTGAFGLSIHRKFPLVATAIPC* 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 637804 639567 + CsaV3_1G001120.1 Csa01g00112 514609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00112 509 PRINTS P450 superfamily signature 314 331 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00112 509 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00112 509 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00112 509 Gene3D Cytochrome P450 32 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00112 509 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506|GO:0016705
Csa01g00112 509 Pfam Cytochrome P450 46 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00112 509 SUPERFAMILY Cytochrome P450 45 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00112 509 PANTHER CYTOCHROME P450 71B11-RELATED 22 506 - -
Csa01g00112 509 PRINTS E-class P450 group I signature 73 92 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00112 509 PRINTS E-class P450 group I signature 97 118 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00112 509 PRINTS E-class P450 group I signature 188 206 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00112 509 PRINTS E-class P450 group I signature 303 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00112 509 PRINTS E-class P450 group I signature 323 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00112 509 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00112 509 PRINTS E-class P450 group I signature 409 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00112 509 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00112 509 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00112 509 PANTHER CYTOCHROME P450 71A21-RELATED 22 506 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00112 Csa-Chr1:637804 Csa01g00905 Csa-Chr1:5635608 1.15E-154 dispersed
Csa01g00909 Csa-Chr1:5662884 Csa01g00112 Csa-Chr1:637804 1.87E-94 dispersed
Csa01g01762 Csa-Chr1:14380936 Csa01g00112 Csa-Chr1:637804 9.02E-73 transposed
Csa06g01117 Csa-Chr6:9273652 Csa01g00112 Csa-Chr1:637804 1.76E-75 transposed
Csa01g00112 Csa-Chr1:637804 Csa01g00894 Csa-Chr1:5553408 1.24E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00112 - - csv:101203222 976.852