Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00116 ATGAATCCTTATGACCATAGATACGCCGATCCTAATTCCTACCGCGACCGTCGAAGTGACCTAGTGGGTTTTCAGCCTGCTGCGCCACCGCCAATAGCAGGGCGTGAATCCTTGTATAAAGGCTACCAACCTCCTCCAGCTCCATACTATGGTCGTGAAAGAGGTGGTGGAGGTGCTTTACCTAATGCTGGAGGCGTCAATGGCCTCCCTCGATTTCAGCCTCCTGCAGGATCGTTTAATATTGGCCGGGGTGGTGGTGGTGGTTTCGGTAGCAGCGGTGGTGGCAGGAGGACGTTTGATGCGGAGAGGGGTGGGAGAAGAATTGGTGGGAGTATTGGTTTTGGAGGTGGACGTGGTGGAGGGACGGGATTTGATGGCCGTGGTGGCGGAAGAGGGGGTGGACGAGGTGGTGGTGGTTCTTCAAGAGGGGATTTGGATAACATTGTCCTTCCGAGTCAGAATTTTGGCAATTTGGTGCCTTTTGAAAAGAATTTCTACACTGAGTGTCCTTCTGTGCGTGCAATGACGGAGTCTGAAGTTAAGATTTATAGAGAGAGACGTGATATTAGGGTGGAAGGATACGATGTCCCGAGACCGATTAGGAGTTTTCAGGAGGCGAATTTTCCTGCTTACTGCCTTGATGTAATTGCGAAATTGGGATTTGTTGAGCCAACTCCAATTCAGGCTCAAGGATGGCCGATGGCCTTGAAAGGAAGAGATTTGGTTGGCATTGCTGAAACTGGCTCTGGGAAGACTCTTGCCTATCTACTGCCAGCTGTAATACACATTAGTGCCCAGCCTCGTTTATCGCGTGGTGAAGGTCCCATTGTGTTGGTGTTAGCACCCACTAGAGAATTAGCTGTTCAAATTCAGCAAGAGGCTACTAAATTCGGACTGCATGCTAATATTAGAAGTACTTGCGTTTATGGTGGGGCTCCAAAAGGGCCTCAAATTCGTGATCTCAAAAATGGTGTTGAGATTGTTATTGCTACACCTGGTCGGCTCATAGATATGCTGGAAGCTGGCCACACAAACTTGCGGCGAGTGACTTACCTTGTTTTAGATGAAGCAGATAGAATGCTGGACATGGGATTTGAGCCTCAAATAAGGACAATCGTTAGCCAAATCCGACCGGATAGGCAGACATTATATTGGAGTGCCACATGGCCAAGGGAGGTTGAGAAATTGGCTAGACAATTTTTGCGTAATGCATATAAGGTCATTATTGGTTCCCCAGATCTTAAAGCTAACCAGTCTATAAACCAAGTTGTTGAAGTTTTGCCAGAGGCTGAGAAATATAGAAGGTTAATAAAATTGCTCGGAGAAGTAATGGATGGTAGTCGTATTCTGATTTTTGTGGAAACAAAAAAGGGCTGTGATAAAGTAACGAGGCAATTGAGAATGGATGGATGGCCAGCTCTATCCATTCACGGTGACAAAAAGCAGGCTGAAAGGGACTTGGTTTTGTCAGAATTTAAGAGTGGGAGAAACCCAATAATGACAGCCACGGATGTGGCTGCAAGAGGGCTTGATGTGAAAGATATAAAATGTGTGATCAACTTTGATTTCCCATCAAGCCTCGAGGACTACGTCCACAGGATAGGCCGAACGGGTCGTGCTGGTGCAAAGGGAACTGCATTCACATTCTTTACTCATGAGAATGCAAAACACGCTAGAGATCTTATAAAGATACTGCGAGAAGCAGGGCAGATTGTCACCCCTGCGTTGTCTGCTTTAGCCTCATCTAGTGGCTTTGGAGGTTCTGGTGCTAAATTTCGCTCCCAAGGACACAGAGGTGGGTTTGGTAATCGAACAATGGTTTCGGGATCAAATGCGATCCCTCTTGGTTTGACGACCAGACCACGCTAG 1869 47.24 MNPYDHRYADPNSYRDRRSDLVGFQPAAPPPIAGRESLYKGYQPPPAPYYGRERGGGGALPNAGGVNGLPRFQPPAGSFNIGRGGGGGFGSSGGGRRTFDAERGGRRIGGSIGFGGGRGGGTGFDGRGGGRGGGRGGGGSSRGDLDNIVLPSQNFGNLVPFEKNFYTECPSVRAMTESEVKIYRERRDIRVEGYDVPRPIRSFQEANFPAYCLDVIAKLGFVEPTPIQAQGWPMALKGRDLVGIAETGSGKTLAYLLPAVIHISAQPRLSRGEGPIVLVLAPTRELAVQIQQEATKFGLHANIRSTCVYGGAPKGPQIRDLKNGVEIVIATPGRLIDMLEAGHTNLRRVTYLVLDEADRMLDMGFEPQIRTIVSQIRPDRQTLYWSATWPREVEKLARQFLRNAYKVIIGSPDLKANQSINQVVEVLPEAEKYRRLIKLLGEVMDGSRILIFVETKKGCDKVTRQLRMDGWPALSIHGDKKQAERDLVLSEFKSGRNPIMTATDVAARGLDVKDIKCVINFDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGAKFRSQGHRGGFGNRTMVSGSNAIPLGLTTRPR* 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 646275 650322 + CsaV3_1G001160.1 Csa01g00116 514613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00116 622 Gene3D - 413 581 IPR027417 -
Csa01g00116 622 CDD SF2_C_DEAD 420 550 - -
Csa01g00116 622 Pfam DEAD/DEAH box helicase 225 396 IPR011545 GO:0003676|GO:0005524
Csa01g00116 622 Gene3D - 165 411 IPR027417 -
Csa01g00116 622 Pfam Helicase conserved C-terminal domain 431 541 IPR001650 -
Csa01g00116 622 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 232 407 IPR014001 -
Csa01g00116 622 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 147 592 - -
Csa01g00116 622 PANTHER LD32873P 147 592 - -
Csa01g00116 622 MobiDBLite consensus disorder prediction 1 146 - -
Csa01g00116 622 SMART ultradead3 220 423 IPR014001 -
Csa01g00116 622 SMART helicmild6 460 541 IPR001650 -
Csa01g00116 622 CDD DEADc_DDX5_DDX17 213 407 - -
Csa01g00116 622 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 353 361 IPR000629 -
Csa01g00116 622 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 201 229 IPR014014 GO:0003724
Csa01g00116 622 MobiDBLite consensus disorder prediction 1 17 - -
Csa01g00116 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 561 IPR027417 -
Csa01g00116 622 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 435 580 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00116 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - csv:101203955 1110.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00116 Csa-Chr1:646275 Csa03g04085 Csa-Chr3:35806219 0 dispersed
Csa07g01354 Csa-Chr7:13428313 Csa01g00116 Csa-Chr1:646275 6.12E-53 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g810 . . . . . . . . . . . . . . . . . Bhi02g00508 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo10g00102 . . . . . . . . . . . . . . . . . . . . . Lsi06g01587 Csa01g00116 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011968 0 3 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00116 Csa_Chr01 FPKM 9.65544 9.963782 7.709025 7.414562 5.625417 5.235587 7.939139 7.909628 8.151263 8.362009