Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00117 ATGTTGAGGGCACAATCAAGACATCCTCTGGACCCCCTATCAGCTGCTGAAATCTCTGTTGCAGTGGCTACCGTCAGGGCAGCTGGAGCCACGCCAGAGGTCAGAGATAGCATGCGTTTCATTGAAGTGGTGCTACTGGAACCAGAAAAACATGTTGTTGCACTGGCAGATGCATATTTTTTCCCTCCATTCCAACCATCTCTGCTTCCTAAAACTAAGGGGGGACCGGTTATTCCCACAAAGCTTCCTCCAAGAAGGGCAAGGATTGTTGTTTACAATAAGAAATCGAATGAGACAAGCATATGGGTAGTTGAGCTGTCAGAGGTTCATGCAGTAACCCGAGGTGGACATCACAGGGGAAAAGTTATATCTTCTTCTGTTGTTCCTGAGGTTCAGCCTCCCATGGATGCTGCTGAGTATGCGGAATGTGAGGCTATTGTCAAAGAATATCCTCCATTCATCGAGGCTATGAAGAAGAGAGGTATTGAAGATATGGATTTGGTTATGGTTGATCCTTGGTGTGTTGGTTATCATAGTGAAGTAGATGCTCCTGGCCGAAGACTAGCTAAGCCTCTTATATTTTGTAGAACTGAAAGTGACTGCCCAATGGAAAATGGATATGCTCGCCCAGTTGAGGGCATACATGTTCTTGTTGATATGCAAAATATGGTGATTATAGAATTTGAAGACCGAAAACTTGTTCCACTACCTCCTGCTGATCCATTGAGGAATTACACTTCTGGTGAAACAAGAGGTGGGGTTGATCGTAGTGATGTGAAGCCCTTACAAATAGTTCAGCCTGAAGGTCCAAGCTTTCGTGTCAATGGCTACTATGTAGAATGGCAAAAGTGGAATTTTCGAATTGGTTTCACTCCCAGAGAGGGTTTGGTTATATATTCTATAGCTTATGTTGATGGAAGCAGAGGGCGAAGGCCTGTAGCACATCGTTTGAGTTTTGTGGAAATGGTTGTCCCCTATGGAGATCCAAATGATCCACATTACAGGAAGAATGCTTTTGATGCAGGAGAGGATGGACTGGGCAAAAATGCGCATTCTCTGAAGAAGGGATGTGATTGTCTGGGTTACATCAAATATTTTGATGCCCATTTCACAAATTTCACTGGTGGTGTTGAAACAATTGAAAACTGTGTGTGCATGCATGAAGAGGACCATGGAATTTTGTGGAAGCATCAAGACTGGAGGACAGGATTGGCAGAAGTTAGAAGATCGAGGCGGCTGACAGTGTCCTTTATTTGTACTGTGGCTAATTATGAGTATGGATTCTTTTGGCACTTCTTTCAGGATGGAAAAATTGAAGCTGAAGTCAAATTAACTGGCATTCTCAGCCTAGGAGCTTTGCAACCTGGTGAATATCGAAAATATGGCACAATGATTGCACCAGGTTTATATGCACCAGTGCATCAACATTTCTTTGTTGCTCGAATGGACATGGCCGTTGATTGCAAGCCTGGTGAAGCTTTCAATCAGGTAGTTGAGGTGGATTTGAAAGTTGAAGGACCTGGGGAGAACAATGTCCACAACAATGCTTTTTACGCTGAAGAGACATTGCTGAAATCAGAAATGCAAGCTATGCGTGATTGTAGTCCTTTATCTGCTCGCCACTGGATAGTGCGAAATACTAGAACTGTGAATCGAACTGGGCAATTAACAGGCTTCAAGCTTTTACCTGGCTCAAATTGTTTGCCATTAGCTGGTTCAGAGGCCAAGTTTCTTAGAAGAGCGTCTTTCTTGAAGCATAATCTTTGGGTGACTCAATATTCTCGTGATGAGATGTTTCCTGGAGGGGAGTTTCCCAATCAGAATCCACGCGTCGGTGAAGGGTTATCGACATGGGTTAAAAAGGATCGACCCTTAGAAGAAACTGATATAGTCCTTTGGTATGTTTTCGGGATCACGCATGTTCCTCGATTGGAAGACTGGCCCGTTATGCCTGTGGATCGCATCGGTTTTACACTTTTGCCTCACGGTTTCTTCAACTGCTCTCCTGCTGTTGACGTTCCTCCCAGTACTTGTGAATTAGATTCAAAAGATGCGGACCCTAAAGAAAACGTGGTGACAAAACCAATTCAAACTCCCATCATCGCTAAGCTCTAA 2115 43.97 MLRAQSRHPLDPLSAAEISVAVATVRAAGATPEVRDSMRFIEVVLLEPEKHVVALADAYFFPPFQPSLLPKTKGGPVIPTKLPPRRARIVVYNKKSNETSIWVVELSEVHAVTRGGHHRGKVISSSVVPEVQPPMDAAEYAECEAIVKEYPPFIEAMKKRGIEDMDLVMVDPWCVGYHSEVDAPGRRLAKPLIFCRTESDCPMENGYARPVEGIHVLVDMQNMVIIEFEDRKLVPLPPADPLRNYTSGETRGGVDRSDVKPLQIVQPEGPSFRVNGYYVEWQKWNFRIGFTPREGLVIYSIAYVDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCMHEEDHGILWKHQDWRTGLAEVRRSRRLTVSFICTVANYEYGFFWHFFQDGKIEAEVKLTGILSLGALQPGEYRKYGTMIAPGLYAPVHQHFFVARMDMAVDCKPGEAFNQVVEVDLKVEGPGENNVHNNAFYAEETLLKSEMQAMRDCSPLSARHWIVRNTRTVNRTGQLTGFKLLPGSNCLPLAGSEAKFLRRASFLKHNLWVTQYSRDEMFPGGEFPNQNPRVGEGLSTWVKKDRPLEETDIVLWYVFGITHVPRLEDWPVMPVDRIGFTLLPHGFFNCSPAVDVPPSTCELDSKDADPKENVVTKPIQTPIIAKL* 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 661266 667885 + CsaV3_1G001170.1 Csa01g00117 514614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00117 704 SUPERFAMILY Amine oxidase N-terminal region 5 133 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Csa01g00117 704 Gene3D Copper amine oxidase, catalytic domain 249 675 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Csa01g00117 704 Gene3D - 138 241 - -
Csa01g00117 704 Pfam Copper amine oxidase, enzyme domain 262 670 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Csa01g00117 704 Pfam Copper amine oxidase, N3 domain 133 236 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Csa01g00117 704 SUPERFAMILY Amine oxidase catalytic domain 256 675 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Csa01g00117 704 SUPERFAMILY Amine oxidase N-terminal region 132 249 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Csa01g00117 704 Pfam Copper amine oxidase, N2 domain 8 107 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Csa01g00117 704 PANTHER COPPER AMINE OXIDASE 3 698 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Csa01g00117 704 PANTHER AMINE OXIDASE 3 698 - -
Csa01g00117 704 Gene3D - 1 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00117 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - csv:101204200 1458.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00879 Csa01g00117 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00117 Csa-Chr1:661266 Csa07g01171 Csa-Chr7:11469830 1.04E-84 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g808 . . . . . . . Bma12g01051 . Cmo18g00148 Cma10g00100 Cma11g00072 Car10g00088 Car11g00064 . . Cpe04g01579 Bhi02g00507 Tan09g2296 . . Hepe09g0230 . . Cla06g01692 Cam06g1880 Cec06g1927 Cco06g1932 Clacu06g1836 Cmu06g1778 Cre06g2593 . . Cone13ag0162 . Lsi02g00406 Csa01g00879 Chy12g01244 Cme12g01667 . Blo15g00254 . . . . . . Sed01g1626 Cmo10g00103 Cmo11g00074 . Cma18g00187 . Car18g00179 Cpe09g01008 Cpe18g00864 Bhi08g01653 Tan05g1977 Cmetu12g1973 Lac10g0487 Hepe07g2202 . . Cla01g01326 Cam01g1402 Cec01g1434 Cco01g1489 Clacu01g1392 Cmu01g1300 Cre01g1240 Lsi06g01586 Csa01g00117 Chy02g02610 Cme02g02007
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003458 1 2 3 2 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 4 0 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00117 Csa_Chr01 FPKM 11.86937 13.802938 7.53823 7.114658 7.74696 8.04663 9.049363 7.274722 8.285672 10.055427