Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00120 ATGTCGTTTAATCTCCATATCCTCACGACGGAGCTTTCCAAGAGTTTTCTAACTCTTTTACGAACAAAGGAACTGCATGCTTTTATTACCAAATCCCATCTTGCTTCCGACCCATTTTACGCAACTAGAATTGTTAAGCTCTACTCCATCAATGCTAAACTCGGTTATGCCCGCCATTTGTTTGACAAAACTCCCAACCGAAGTGTCTACCTTTGGAACTCAATCATTCGAGCTTACGCGAAAGCATATAAATTCAGGGATGCATTATCTCTGTTCCTCACAATGTCTGGAACTGAGACATCGCCCGATAACTTCACTTATTCATGCATCATAAGGGCATGCTCTGAGAATCACCATAGAGAATGGCTTAAGTTTGTTCATGGACGAGTTTTAGTAACTGGGTTTGGATTAGATCCTATTTGTTGCAGCGCTCTAGTGACTGCATACTCAAATCTGGACCTTATTGAAGAGGCCAGCAAAGTGTTTGGTAGAATACAACATCCAGACTTGGTTATGTGGAACTCAATCATTTGTGGATTTGGGTCTTGTGGGTATTGGAATCAGGGGCTTTTGTTATTTTCTAGGATGAGGAATCTGGGAGAACTTCCGGATGGATACACGGTAGTTGGTGTGGCATCGGGTATAGCAGAACCCAGCCTACTGAGCACTGGCAAAGGCATTCATGGACTTTGCCTCAAGTGTAATTTTGACTCTAATGAGCATGTAGCTAGTGCACTTGTGAGTATGTATTCGAGGTGTAATTGCATGGATTCAGCATATTTAGTATTTAGTAGTTTGTTACAGCCTGACTTAGTTACATGGTCTGCTTTAATAACTGGGTATTCTCAAGCTGGTGACTTTAGGAAAGCAATGTTGTTCTTTCAGAGACTGAATATGCAGGGTAAGAAGATGGATTCTATTTTGATTGCCAGCATTTTGGCTGCTACTGCTCAATCGACCAACATAAGGCATGGAATTGAGATACATGGTTATGTTCTTCGACAAGGGATAGAATCAAACGAGATGATATCTTCTTCTCTCATAGACATGTATTCCAAGTGTGGTTATTTGAGTTTAGGAATTCGTGTTTTTCACGTTATGTCACAAAAAAATATCTCGACATACAATTCTGTAATATGGGGACTTGGTTTGCATGGACTTGCATCAAAGGCATTGGAGATGTTTGAAGAGTTGTTGACCATTGGTTTAGTGCCTAATGAGTCCACTTTCTCTGCTCTCCTCTTTGCGTGCTGCCATGCTGGTCTTAACTCTGTTGGCAAGGAGATTTTCAAACGAATGAAAGATGAGTTTTGCATCAAATACAAAACAGAGCATTACGTTTACATTGTAAAACTTCTTGGAATGACTGGGGAATTAGAAGTGGCTTACAATCTTGTCATGTCCTTACCAGAGCCTGCAGACTCTGGAATTTGGGGAGCTCTACTCTCTTGCTGTGATGCTTGTGGGAACGTTGAACTGGCTGAAGTTGTTGCTCAACGGCTCATAGAAAATGATCCTGAAAAAACTGTTTATAAAGTAATGCTCTCTAATATTTATGCTGGAGATGGGAGATGGGATGATGTGAAGAAGTTAAGGGATACAATGACAGAAAAGGAACGAGGAAAATGTCCTGGTCTTAGCTGGATTTGA 1650 40.91 MSFNLHILTTELSKSFLTLLRTKELHAFITKSHLASDPFYATRIVKLYSINAKLGYARHLFDKTPNRSVYLWNSIIRAYAKAYKFRDALSLFLTMSGTETSPDNFTYSCIIRACSENHHREWLKFVHGRVLVTGFGLDPICCSALVTAYSNLDLIEEASKVFGRIQHPDLVMWNSIICGFGSCGYWNQGLLLFSRMRNLGELPDGYTVVGVASGIAEPSLLSTGKGIHGLCLKCNFDSNEHVASALVSMYSRCNCMDSAYLVFSSLLQPDLVTWSALITGYSQAGDFRKAMLFFQRLNMQGKKMDSILIASILAATAQSTNIRHGIEIHGYVLRQGIESNEMISSSLIDMYSKCGYLSLGIRVFHVMSQKNISTYNSVIWGLGLHGLASKALEMFEELLTIGLVPNESTFSALLFACCHAGLNSVGKEIFKRMKDEFCIKYKTEHYVYIVKLLGMTGELEVAYNLVMSLPEPADSGIWGALLSCCDACGNVELAEVVAQRLIENDPEKTVYKVMLSNIYAGDGRWDDVKKLRDTMTEKERGKCPGLSWI* 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 681651 683300 + CsaV3_1G001200.1 Csa01g00120 514617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00120 549 Gene3D Tetratricopeptide repeat domain 125 223 IPR011990 GO:0005515
Csa01g00120 549 Gene3D Tetratricopeptide repeat domain 402 549 IPR011990 GO:0005515
Csa01g00120 549 Gene3D Tetratricopeptide repeat domain 228 355 IPR011990 GO:0005515
Csa01g00120 549 Gene3D Tetratricopeptide repeat domain 10 124 IPR011990 GO:0005515
Csa01g00120 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Csa01g00120 549 Pfam E motif 490 549 IPR046848 -
Csa01g00120 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Csa01g00120 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Csa01g00120 549 Pfam PPR repeat family 68 114 IPR002885 -
Csa01g00120 549 Pfam PPR repeat family 370 419 IPR002885 -
Csa01g00120 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Csa01g00120 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Csa01g00120 549 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 548 - -
Csa01g00120 549 PANTHER OS01G0545900 PROTEIN 6 548 - -
Csa01g00120 549 TIGRFAM PPR: pentatricopeptide repeat domain 70 103 IPR002885 -
Csa01g00120 549 TIGRFAM PPR: pentatricopeptide repeat domain 272 301 IPR002885 -
Csa01g00120 549 TIGRFAM PPR: pentatricopeptide repeat domain 171 204 IPR002885 -
Csa01g00120 549 Pfam PPR repeat 141 165 IPR002885 -
Csa01g00120 549 Pfam PPR repeat 171 200 IPR002885 -
Csa01g00120 549 Pfam PPR repeat 272 297 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00120 - - - csv:101205656 1107.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00120 Csa-Chr1:681651 Csa04g01867 Csa-Chr4:18423678 3.16E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g803 . . . . . . . . . . Cma10g00102 . Car10g00091 . . . . Bhi02g00502 . . . Hepe09g0226 . . . . . . . . . . . Cone13ag0161 . . . . . Blo13g00138 . . . . . . . . Cmo10g00106 . . . . . . . . . . . . . . . . . . . . . . Csa01g00120 Chy02g02607 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014459 0 1 1 0 0 1 1 0 0 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00120 Csa_Chr01 FPKM 0.0 0.0 0.516324 0.4637 2.383043 2.637305 3.763814 0.17502 0.0 0.0