Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00123 | ATGGCATCATCAAGTTCCTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCATAAAATCTTTGGGGCTAGCAATGTAACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGGGAGGATGCAGTGAACTCTTTAGCCTACGAGGCTGAGGCTCGAGTTCGAGACCCGGTTTACGGTTGCGTTGGAGCAATCTCCTTCCTTCAAAGGCAAGTCCAAAGGCTCCAAAAGGAACTCGACGCTGCTAATGCCGACCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGTCATCAAGTGGTTCAGCCCAGCAGCCTCGGCAGTCGCCCAAGGGCATTAGATCAATATCACACAAGTTCAACAACTGGATATTATAATCATCTTCCTGCTTTTTCCATGGCTTATCCATTGCCTTGGAATGAAAACACTTCTGGTAATAACATCAATGAAGGAGGAAGAGATGGCAATATTTGA | 555 | 45.41 | MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSHQVVQPSSLGSRPRALDQYHTSSTTGYYNHLPAFSMAYPLPWNENTSGNNINEGGRDGNI* | 185 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 692578 | 695698 | + | CsaV3_1G001230.1 | Csa01g00123 | 514620 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00123 | 184 | PANTHER | ELONGATED PETIOLULE 1 | 1 | 183 | - | - | |
Csa01g00123 | 184 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 183 | - | - | |
Csa01g00123 | 184 | Coils | Coil | 89 | 116 | - | - | |
Csa01g00123 | 184 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
Csa01g00123 | 184 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 107 | IPR004883 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa01g00875 | Csa01g00123 | CCT | |
Csa01g00875 | Csa01g00123 | ECH | |
Csa01g00123 | Csa01g00875 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00123 | Csa-Chr1:692578 | Csa03g03970 | Csa-Chr3:34700634 | 3.91E-73 | dispersed | |
Csa06g00613 | Csa-Chr6:5177900 | Csa01g00123 | Csa-Chr1:692578 | 3.08E-38 | dispersed | |
Csa02g00714 | Csa-Chr2:5807886 | Csa01g00123 | Csa-Chr1:692578 | 9.04E-62 | transposed | |
Csa06g03827 | Csa-Chr6:30345815 | Csa01g00123 | Csa-Chr1:692578 | 1.43E-40 | transposed | |
Csa07g02387 | Csa-Chr7:21984527 | Csa01g00123 | Csa-Chr1:692578 | 1.78E-29 | transposed | |
Csa02g01532 | Csa-Chr2:14567747 | Csa01g00123 | Csa-Chr1:692578 | 1.13E-51 | transposed | |
Csa01g00123 | Csa-Chr1:692578 | Csa01g00875 | Csa-Chr1:5466501 | 2.48E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30605 | PF03195 | LOB | 2.80E-42 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00123 | - | - | csv:101205890 | 383.259 |