Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00123 ATGGCATCATCAAGTTCCTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCATAAAATCTTTGGGGCTAGCAATGTAACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGGGAGGATGCAGTGAACTCTTTAGCCTACGAGGCTGAGGCTCGAGTTCGAGACCCGGTTTACGGTTGCGTTGGAGCAATCTCCTTCCTTCAAAGGCAAGTCCAAAGGCTCCAAAAGGAACTCGACGCTGCTAATGCCGACCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGTCATCAAGTGGTTCAGCCCAGCAGCCTCGGCAGTCGCCCAAGGGCATTAGATCAATATCACACAAGTTCAACAACTGGATATTATAATCATCTTCCTGCTTTTTCCATGGCTTATCCATTGCCTTGGAATGAAAACACTTCTGGTAATAACATCAATGAAGGAGGAAGAGATGGCAATATTTGA 555 45.41 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSHQVVQPSSLGSRPRALDQYHTSSTTGYYNHLPAFSMAYPLPWNENTSGNNINEGGRDGNI* 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 692578 695698 + CsaV3_1G001230.1 Csa01g00123 514620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00123 184 PANTHER ELONGATED PETIOLULE 1 1 183 - -
Csa01g00123 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 183 - -
Csa01g00123 184 Coils Coil 89 116 - -
Csa01g00123 184 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Csa01g00123 184 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00875 Csa01g00123 CCT
Csa01g00875 Csa01g00123 ECH
Csa01g00123 Csa01g00875 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00123 Csa-Chr1:692578 Csa03g03970 Csa-Chr3:34700634 3.91E-73 dispersed
Csa06g00613 Csa-Chr6:5177900 Csa01g00123 Csa-Chr1:692578 3.08E-38 dispersed
Csa02g00714 Csa-Chr2:5807886 Csa01g00123 Csa-Chr1:692578 9.04E-62 transposed
Csa06g03827 Csa-Chr6:30345815 Csa01g00123 Csa-Chr1:692578 1.43E-40 transposed
Csa07g02387 Csa-Chr7:21984527 Csa01g00123 Csa-Chr1:692578 1.78E-29 transposed
Csa02g01532 Csa-Chr2:14567747 Csa01g00123 Csa-Chr1:692578 1.13E-51 transposed
Csa01g00123 Csa-Chr1:692578 Csa01g00875 Csa-Chr1:5466501 2.48E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30605 PF03195 LOB 2.80E-42 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00123 - - csv:101205890 383.259