Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00128 ATGGTATTTTCAGTTTCCATTATTCTAAGTTTGGGAAAACTTATGAAGGATACTCTTAGATACTTAGCAGGAATTCCAGGCCCCAGTGGCTATGGCTCCAAATCTACTGCTGAACAAGTCTCTCTATTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACTTCTCAACTTACTGCCATTATCACTGGGGCAACATCAGGAATTGGGGCAGAAACAGCAAGAGTATTGGCAAAGAGAGGAGTGAAAATAGTGATGACAGCAAGAGACTTGAAAAAAGCAGCTCAAGTTAAAGAAGCAATTCAAAAAGAAAGCCCTGAGGCTGAGATTATTGTGTTTGAAATCGATCTCAGTTCATTGGCTTCTGTCCAAAGCTTTTGTAATCAGTTTCTTTCTCTTGGACTCCCACTTAACATTCTCATAAATAATGCTGGAGTCTTCTCCAAGAATTTGGAGTTCTCTGAAGACAAAGTTGAGTTGACATTTGCAACAAATTATTTGGGACATTATTTACTAACAGAGAGGCTGTTAGAGAAAATGATAGAAACAGCAGCCAAGACAGGAATTGAAGGAAGGATTATCAACGTTTCATCGGTGGTTCATGGCTGGGTGAAGAAAGATGGTTTAAGCTTTCGTCAAATGCTCAACCCAAACAGTTACAATGGCACTCGTGCATATGCTCAATCAAAACTAGCCAATATCTTGCATGCTAAGGAACTATCAAGGCAACTTCAGGGAAGAAATGCCAGAGTCACCATAAATGCAGTTCATCCAGGAATTGTAAAAACTGCCATCATTAGAGCTCACAAGGGCTTTATCACAGATTCATTGTTTTTTATGGCATCAAAGTTACTTAAAACTACAAGTCAGGGAGCATCAACAACATGCTACGTAGCACTGAGTTCGCAAACAGAAGGAAAGAGTGGAAAATTTTACGCAGATTGTAACGAGACTAACTGCTCATCCTTAGCCAATGATGAGTTAGAAGCACAAAAGTTATGGACTCAAACTCGCAACTTAATCAATAGACGACTAAGCAAACTTCCCTCCTAG 1074 39.29 MVFSVSIILSLGKLMKDTLRYLAGIPGPSGYGSKSTAEQVSLFPSSSSSSSSSSSSSSSSSTSQLTAIITGATSGIGAETARVLAKRGVKIVMTARDLKKAAQVKEAIQKESPEAEIIVFEIDLSSLASVQSFCNQFLSLGLPLNILINNAGVFSKNLEFSEDKVELTFATNYLGHYLLTERLLEKMIETAAKTGIEGRIINVSSVVHGWVKKDGLSFRQMLNPNSYNGTRAYAQSKLANILHAKELSRQLQGRNARVTINAVHPGIVKTAIIRAHKGFITDSLFFMASKLLKTTSQGASTTCYVALSSQTEGKSGKFYADCNETNCSSLANDELEAQKLWTQTRNLINRRLSKLPS* 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 753010 758844 + CsaV3_1G001280.1 Csa01g00128 514625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00128 357 PANTHER RETINOL DEHYDROGENASE 18 352 - -
Csa01g00128 357 Pfam short chain dehydrogenase 66 207 IPR002347 -
Csa01g00128 357 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 18 352 - -
Csa01g00128 357 Gene3D - 52 353 - -
Csa01g00128 357 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 153 IPR002347 -
Csa01g00128 357 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 206 IPR002347 -
Csa01g00128 357 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 233 252 IPR002347 -
Csa01g00128 357 CDD retinol-DH_like_SDR_c_like 66 341 - -
Csa01g00128 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 65 326 IPR036291 -
Csa01g00128 357 PRINTS Glucose/ribitol dehydrogenase family signature 66 83 IPR002347 -
Csa01g00128 357 PRINTS Glucose/ribitol dehydrogenase family signature 142 153 IPR002347 -
Csa01g00128 357 PRINTS Glucose/ribitol dehydrogenase family signature 192 208 IPR002347 -
Csa01g00128 357 PRINTS Glucose/ribitol dehydrogenase family signature 233 252 IPR002347 -
Csa01g00128 357 PRINTS Glucose/ribitol dehydrogenase family signature 256 273 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00128 - - - csv:101205419 658.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00128 Csa-Chr1:753010 Csa05g00201 Csa-Chr5:1199745 1.11E-107 dispersed
Csa05g02195 Csa-Chr5:24814534 Csa01g00128 Csa-Chr1:753010 5.96E-14 dispersed
Csa01g00128 Csa-Chr1:753010 Csa04g00593 Csa-Chr4:3923424 2.72E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g794 Blo04g00726 . . . Bpe12g00629 Bpe13g00248 Bma06g00212 . Cmo13g00903 . Cma10g00111 . Car10g00100 . . Cpe20g00254 . . . . . . . . Cla06g01682 Cam06g1869 Cec06g1918 Cco06g1923 Clacu06g1824 Cmu06g1767 Cre06g2583 Cone2ag0923 Cone16ag0084 Cone13ag0157 Cone19ag0156 Lsi02g00396 . . . Blo13g00099 . Bda11g01661 Bda14g00802 . Bpe15g00646 Bma03g00776 . . Cmo10g00115 . Cma13g00871 . Car13g00713 . . Cpe18g00854 Bhi08g01646 . . Lac10g0476 . . . Cla01g01319 Cam01g1411 Cec01g1442 Cco01g1481 Clacu01g1384 Cmu01g1293 Cre01g1248 Lsi06g01573 Csa01g00128 Chy02g02599 Cme02g01995
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002718 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 4 2 2 1 1 2 2 2 2 2 3 2 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00128 Csa_Chr01 FPKM 0.21089 0.684504 0.0 0.422663 2.664165 2.133659 2.832256 0.207975 0.172904 0.22565