Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00130 ATGTTAATGCCTGTAAATTCATGGACCCTCCCCTCATCTATCCTAATCCTTTGTTTTTCAGTCTTGTATCTTTTCTTCCCTTTTGGAGTTTCCGCCATTAATGAACAGGGTCAAGCTCTACTCAATTGGAAGCTAAGTTTTAATGGATCAAACGAGGCTCTATATAATTGGAACCCCAACAATGAAAATCCATGTGGGTGGTTTGGAATCAGTTGCAATAGAAATAGAGAAGTAGTGGAAGTAGTATTGAGATACGTGAACTTACCAGGAAAGCTTCCATTGAATTTCTCTCCATTGTCATCCTTGAACAGGCTTGTCTTGTCTGGAGTGAATCTCACTGGTTCAATTCCTAAAGAGATCAGTGCTCTAACCCAGTTGCGTACCTTGGAACTCAGTGACAATGGTTTAACTGGAGAAATTCCAAGTGAAATATGCAATTTGGTAGATCTTGAACAGCTTTACCTCAATTCAAATCTACTCGAAGGGTCAATACCTGCAGGTATCGGAAATCTCACAAATTTGAAGGAGCTGATTCTGTATGATAATCAGTTGAGTGGTGAAATTCCCATTAGCATAGGGAATTTGAAGCAGCTTGAAGTGATTAGAGCTGGAGGGAACAAGAACTTACATGGTTCTGTGCCGGAAGAAATTGGTAATTGCAGTAGTTTGGTGATTCTTGGTTTAGCTGAAACAAGCATCTCCGGCTTTCTTCCATCTAGTCTTGGCCGACTGAAGAAGCTTCAAACATTGGCAATCTATACTGCACTTCTCTCCGGCCAGATTCCTCAAGAACTTGGTGACTGCACTGAGCTTCAAAACATCTATCTCTACGAGAATTCGCTCTCCGGTTCCATCCCAAGCACATTAGGAAGGCTACAGAATCTTCAGAGTGTGCTAATATGGCAGAACAGTTTGGTCGGTGTAATACCGCCGGAGCTCGGTAGGTGTGACCAATTGTTCGTCATCGACATTTCAATTAATTCTCTGACGGGAAGCATTCCTTCAACATTTGGTAATTTAACATTGCTCCAAGAATTGCAGCTGAGCACAAATCAATTATCCGGTGAGATTCCGAAGGAGATCGGAAATTGTCCGAGAATCACTCACATCGAGCTTGATAACAACCAGCTCACTGGAACGATTCCTTCTGAATTGGGAAATCTCACCAATCTTACATTGCTGTTCTTGTGGCAAAACAAGCTTGAGGGAAGTATTCCACCCACCATTTCGAATTGTCGCAATCTCGAGGCGTTGGATTTATCACTGAATGCCTTGACAGGTTCAATTCCGACAGGAATTTTCCAGTTGAAAAAACTTTCTAAGCTTCTGCTTCTTTCCAACAACCTCTCCGGTGTGATACCCCCGGCAATAGGTAACTGTTCGGCTCTGTTTCGGTTCAGAGCTAACAACAACAAGCTCAGCGGAGAAATTCCGCCGGAGATTGGGAATTTGAAGAGCTTGATTTTCCTAGACCTCGGAAACAATCACCTCACTGGAGCGTTGCCACCGGAGATTTCCGGCTGTCGAAATTTGACATTCCTCGATATGCATTCCAACTCTATCAAATTTCTTCCACAAGAATTCAACCAGCTTTCTTCCCTGCAGTACGTTGATCTCTCAAATAATCTAATCGAAGGGTCGCCGAATCCGAGTTTTGGATCTTTTAACTCGCTCACGAAACTCGTTCTCTCAAACAACCGCTTCTCTGGACCTATACCAACTGAAATCGGTACCTGCTTGAAACTGCAGTTACTGGATTTAAGTTGCAATCAGCTTTCCGGAAACATTCCTCCAAGCCTAGGCAAGATTCCTTCACTAGAAATTAGCCTCAATCTGAGCTTAAACCAACTAACCGGTGAGATTCCGTCGGAGTTGGCAAATTTAGACAAGCTAGGGTCATTGGACCTCTCTTACAACCAACTCTCGGGCGACCTCCACATTCTCGCAGACATGCAGAATCTCGTAGTCCTCAATGTATCACACAACAATTTCTCAGGACGCGTACCAGAGACGCCATTCTTCACGCAGCTCCCTCTGAGCGTCCTATCGGGTAACCCGGACTTGTGCTTCGCCGGCGAAAAATGCTACTCCGACAACCACAGCGGCGGCGGTCACCACACACTAGCGGCTCGAGTGGCCATGGTGGTGTTACTGTGCACGGCATGTGCACTGCTATTAGCAGCAGTTTATATCATTCTCAAAGATAGACATTCATGTCGAAGATGCATCAATGGGTCCCGCGGTGAAGATCCAGACACCGCCTTCGACAGCGACTTGGAGCTTGGTTCAGGTTGGGAAGTGACACTATACCAGAAGCTCGACCTCTCAATCTCCGATGTAATCAAGTGCTTAACGCCGGCCAACGTCATCGGCCGTGGCAAGACCGGCGTGGTGTACAGAGCATGCATCTCATCAGGATTAATAATCGCTGTAAAACGATTCCGATCATCGGATAAGTTCTCGGCGGCGGCATTTTCATCTGAAATCGCAACATTGGCGAGGATCCGGCATCGGAACATCGTCCGATTGCTTGGGTGGGGGGCGAATCGGAGGACGAAGTTGCTGTTCTACGATTACTTGCCGAATGGAAATTTGGGCGCGTTGCTACACGAAGGAAATGGGCGCGTGGGGCTAGACTGGGAAAGTAGATTCAAGATAGCGCTGGGCGTGGCGGAGGGATTGGCTTATTTGCACCACGACTGCGTTCCGGCGATATTGCACCGGGACGTGAAGGCTCACAATATCCTGTTGGGAGATCGCTACGAGGCGTGTTTGGCGGACTTTGGGCTCGCTCGATTGGTTGAAGATGGTCCAAGCGGTTCGTCTTCCGCGAACCCACAGTTTGCCGGCTCCTACGGCTATTTTGCACCTGAATACGGGTGCATGCTAAGGATCACAGAAAAGAGCGATGTGTATAGCTACGGTGTTGTTTTGCTAGAGATAATAACAGGCAAAAAGCCAGCGGATTCGTCATTTGCCGAGGGCCAACATGTGATTCAATGGGTAAGAGATCATTTAAAGAAGAAGAAGGATCCGGTTTTGATCTTGGATCCGAAACTTCAAGGACAACCTGACTCACAAATACAAGAGATTCTACAAGTATTGGGGATCTCTTTACTTTGTACCAGTGATCGCTCTGAAGACCGGCCAACGATGAAAGACGTGGCGGCTCTTTTACGGGAGATCCAACAAGATCAAATGGGAACAGAGGCGGAGACCGCTGACAAGCCTCCACGAAAGAATAGCAATGCAACAAGTTTTGATACAACAACATCGTTTTCTTCTTCCTCTTCTATGGCTCCTGCAAGTCACTTGCTTTTTACATTACCCCTTCAGGAATCGTCACGTTGCTCTTATGCTTCACTATCATCGTCCGGCGCATATATTCCACGCAAATAA 3399 46.34 MLMPVNSWTLPSSILILCFSVLYLFFPFGVSAINEQGQALLNWKLSFNGSNEALYNWNPNNENPCGWFGISCNRNREVVEVVLRYVNLPGKLPLNFSPLSSLNRLVLSGVNLTGSIPKEISALTQLRTLELSDNGLTGEIPSEICNLVDLEQLYLNSNLLEGSIPAGIGNLTNLKELILYDNQLSGEIPISIGNLKQLEVIRAGGNKNLHGSVPEEIGNCSSLVILGLAETSISGFLPSSLGRLKKLQTLAIYTALLSGQIPQELGDCTELQNIYLYENSLSGSIPSTLGRLQNLQSVLIWQNSLVGVIPPELGRCDQLFVIDISINSLTGSIPSTFGNLTLLQELQLSTNQLSGEIPKEIGNCPRITHIELDNNQLTGTIPSELGNLTNLTLLFLWQNKLEGSIPPTISNCRNLEALDLSLNALTGSIPTGIFQLKKLSKLLLLSNNLSGVIPPAIGNCSALFRFRANNNKLSGEIPPEIGNLKSLIFLDLGNNHLTGALPPEISGCRNLTFLDMHSNSIKFLPQEFNQLSSLQYVDLSNNLIEGSPNPSFGSFNSLTKLVLSNNRFSGPIPTEIGTCLKLQLLDLSCNQLSGNIPPSLGKIPSLEISLNLSLNQLTGEIPSELANLDKLGSLDLSYNQLSGDLHILADMQNLVVLNVSHNNFSGRVPETPFFTQLPLSVLSGNPDLCFAGEKCYSDNHSGGGHHTLAARVAMVVLLCTACALLLAAVYIILKDRHSCRRCINGSRGEDPDTAFDSDLELGSGWEVTLYQKLDLSISDVIKCLTPANVIGRGKTGVVYRACISSGLIIAVKRFRSSDKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLGALLHEGNGRVGLDWESRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDRYEACLADFGLARLVEDGPSGSSSANPQFAGSYGYFAPEYGCMLRITEKSDVYSYGVVLLEIITGKKPADSSFAEGQHVIQWVRDHLKKKKDPVLILDPKLQGQPDSQIQEILQVLGISLLCTSDRSEDRPTMKDVAALLREIQQDQMGTEAETADKPPRKNSNATSFDTTTSFSSSSSMAPASHLLFTLPLQESSRCSYASLSSSGAYIPRK* 1133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 766752 771859 + CsaV3_1G001300.1 Csa01g00130 514627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00130 1132 SUPERFAMILY Protein kinase-like (PK-like) 775 1059 IPR011009 -
Csa01g00130 1132 PANTHER OS01G0170300 PROTEIN 4 1080 - -
Csa01g00130 1132 Pfam Leucine Rich Repeat 125 147 IPR001611 GO:0005515
Csa01g00130 1132 Gene3D Ribonuclease Inhibitor 236 331 IPR032675 -
Csa01g00130 1132 Gene3D Ribonuclease Inhibitor 332 433 IPR032675 -
Csa01g00130 1132 Gene3D Phosphorylase Kinase; domain 1 768 859 - -
Csa01g00130 1132 ProSiteProfiles Protein kinase domain profile. 784 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00130 1132 Gene3D Ribonuclease Inhibitor 35 146 IPR032675 -
Csa01g00130 1132 ProSitePatterns Protein kinases ATP-binding region signature. 790 812 IPR017441 GO:0005524
Csa01g00130 1132 SUPERFAMILY L domain-like 59 311 - -
Csa01g00130 1132 Pfam Leucine Rich repeat 411 427 IPR001611 GO:0005515
Csa01g00130 1132 SUPERFAMILY RNI-like 274 643 - -
Csa01g00130 1132 Pfam Protein kinase domain 788 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00130 1132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 905 917 IPR008271 GO:0004672|GO:0006468
Csa01g00130 1132 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Csa01g00130 1132 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1080 - -
Csa01g00130 1132 SMART LRR_sd22_2 123 149 - -
Csa01g00130 1132 SMART LRR_sd22_2 171 197 - -
Csa01g00130 1132 SMART LRR_sd22_2 628 653 - -
Csa01g00130 1132 SMART LRR_sd22_2 388 417 - -
Csa01g00130 1132 Gene3D Transferase(Phosphotransferase) domain 1 860 1086 - -
Csa01g00130 1132 Gene3D Ribonuclease Inhibitor 147 235 IPR032675 -
Csa01g00130 1132 Gene3D Ribonuclease Inhibitor 434 697 IPR032675 -
Csa01g00130 1132 MobiDBLite consensus disorder prediction 1067 1099 - -
Csa01g00130 1132 MobiDBLite consensus disorder prediction 1078 1099 - -
Csa01g00130 1132 SMART LRR_typ_2 292 316 IPR003591 -
Csa01g00130 1132 SMART LRR_typ_2 171 195 IPR003591 -
Csa01g00130 1132 SMART LRR_typ_2 388 412 IPR003591 -
Csa01g00130 1132 SMART LRR_typ_2 484 508 IPR003591 -
Csa01g00130 1132 SMART LRR_typ_2 413 436 IPR003591 -
Csa01g00130 1132 SMART LRR_typ_2 509 530 IPR003591 -
Csa01g00130 1132 SMART LRR_typ_2 123 147 IPR003591 -
Csa01g00130 1132 SMART LRR_typ_2 651 684 IPR003591 -
Csa01g00130 1132 SMART LRR_typ_2 555 579 IPR003591 -
Csa01g00130 1132 SMART LRR_typ_2 340 364 IPR003591 -
Csa01g00130 1132 SMART LRR_typ_2 531 554 IPR003591 -
Csa01g00130 1132 SMART serkin_6 784 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00130 1132 Pfam Leucine rich repeat 518 568 IPR001611 GO:0005515
Csa01g00130 1132 Pfam Leucine rich repeat 319 377 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00871 Csa01g00130 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00130 Csa-Chr1:766752 Csa02g00988 Csa-Chr2:9467191 0 dispersed
Csa04g00913 Csa-Chr4:6672460 Csa01g00130 Csa-Chr1:766752 2.65E-145 transposed
Csa07g00255 Csa-Chr7:1993692 Csa01g00130 Csa-Chr1:766752 9.22E-07 transposed
Csa07g01065 Csa-Chr7:10186707 Csa01g00130 Csa-Chr1:766752 0 transposed
Csa01g00130 Csa-Chr1:766752 Csa01g00871 Csa-Chr1:5443326 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77732 PF00069 Pkinase 4.50E-39 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00130 - - csv:101206847 2154.79