Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00132 ATGATGGGTATCGAAATTTGTGGAAAAATAGACAAAGTAAATGGGAAAGGACTGAGTTATAAGGAATTTGTAGAACGATACATGGAGAAGAACAAACCTGTGGTGTTGACAGGTCTCATGGATGATTGGAAGGCTTGCAGTGATTGGGTCGACGAGAATGGGCAGCCAAATCTAAGTTTCTTTTCCACCCATTTCGGGAAATCCAGGGTACAGGTTGCAGATTGCAGTACTAAAGAATTTACAGATCAGAAGAGAGTAGAAATGTCTGTTTCAGAGTTCATTGATCAATGGTGTAAGGAGCCCATACAGGAGCATGGCCTTAGCTCAAACAATGGACTTACTGACAAGTCTGTACTATACTTGAAAGACTGGCATTTTGTGAAGGAATATCTAAATTATACAGCATATTCAACTCCACACTTTGTTTGTGATGACTGGCTGAACCTATACCTTGACAGCTACCGTATGCACAGGGATCCTGACTCTTACCAAGAGAAAGATGAAATAAGTTGCTCCGACTATCGTTTCGTTTACATGGGAGCAAAAGGTTCTTGGACTCCACTTCATGCTGACGTTTTCAGGTCATACAGCTGGTCAGCAAATGTTTGTGGAAAGAAACAGTGGTTTCTTTTGCCTCCTTCTCAGTCTCATCTTGTATTCGACAGGAATATGAAGGCCTGTATTTATAATATCTTTGATGATATAAGTGAATATTTGTTTCCGGGTTTTAAGAAGGCTACCTGGTTGGAATGTATTCAAGAACAGAACGAAATTATATTTGTGCCAAGTGGCTGGTATCATCAAGTTCATAATCTGGATGACACCGTATCAATAAACCACAATTGGTTTAACTCCTACAATCTCTGTTGGGTGTTGGACTTGATGTTGCGGGACTATAATGAAGCCAAGGAGTACATAGAAGACATTAGAGATATATGTGATGATTTTGAAGGTCTCTGTCAGCGCAACCTTGCAGCTAACACAGGCATGAACTTCTATGACTTTTTCATCTTCTTAGCACGCTTTTCGCTCGCGAATTCGGTGGTACTTGACACTCTAGCTAGAGATGCTGAAAATATTGCTGGAATTGGGAGCATATCTCCAATAATTCAGCAGTTGGTTCAGAATCTTTCTTCAATACAGAAGATTGCCTTGAAAATGAAATTCCTGGAATGTTTTTCAGGAGACCAAGGATTCATGTTGGATCTAGTAGAAACACACAAAAATCCCAAGTTTTCTAAACTTTGTTATTCATTAATTCGAACTTGTGAGTCCATACACAATCGACAAGTTTTGAGCTTTTGCTCAAAGACAGTCGCAACACAAGATTCTAGGACTTCGATAGTCATTCAAAACTTTTGTGATGCTGTTTCGTCTCCCCAAGATCTTGTCAAATATATCGACACAGTCTTAACTGAACACACAAGCATAGAATCATCGGAATGA 1446 39.56 MMGIEICGKIDKVNGKGLSYKEFVERYMEKNKPVVLTGLMDDWKACSDWVDENGQPNLSFFSTHFGKSRVQVADCSTKEFTDQKRVEMSVSEFIDQWCKEPIQEHGLSSNNGLTDKSVLYLKDWHFVKEYLNYTAYSTPHFVCDDWLNLYLDSYRMHRDPDSYQEKDEISCSDYRFVYMGAKGSWTPLHADVFRSYSWSANVCGKKQWFLLPPSQSHLVFDRNMKACIYNIFDDISEYLFPGFKKATWLECIQEQNEIIFVPSGWYHQVHNLDDTVSINHNWFNSYNLCWVLDLMLRDYNEAKEYIEDIRDICDDFEGLCQRNLAANTGMNFYDFFIFLARFSLANSVVLDTLARDAENIAGIGSISPIIQQLVQNLSSIQKIALKMKFLECFSGDQGFMLDLVETHKNPKFSKLCYSLIRTCESIHNRQVLSFCSKTVATQDSRTSIVIQNFCDAVSSPQDLVKYIDTVLTEHTSIESSE* 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 782318 787262 + CsaV3_1G001320.1 Csa01g00132 514629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00132 481 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 8 474 - -
Csa01g00132 481 Pfam Cupin-like domain 22 284 IPR041667 -
Csa01g00132 481 ProSiteProfiles JmjC domain profile. 148 299 IPR003347 -
Csa01g00132 481 SUPERFAMILY Clavaminate synthase-like 12 311 - -
Csa01g00132 481 Gene3D Cupin 3 284 - -
Csa01g00132 481 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 8 474 - -
Csa01g00132 481 SMART cupin_9 145 297 IPR003347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00132 - - - csv:101207085 1006.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00132 Csa-Chr1:782318 Csa03g03529 Csa-Chr3:31545567 3.75E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g790 . . Bda06g00609 . . . . Bma12g01045 . . Cma10g00114 . Car10g00104 . Sed08g0098 . . Bhi02g00483 Tan09g2279 Cmetu02g0880 . Hepe09g0216 . . Cla06g01677 Cam06g1865 Cec06g1914 Cco06g1919 Clacu06g1820 Cmu06g1762 Cre06g2579 . . . Cone19ag0154 . . . . . Blo15g00261 . . Bpe07g00850 . . . . Cmo10g00119 . . . . . . Cpe18g00851 . . . . . . . . . . . . . . Lsi06g01566 Csa01g00132 Chy02g02595 Cme02g01991
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009835 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30606 PF13621 Cupin_8 7.80E-24 CL0029 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00132 Csa_Chr01 FPKM 18.753273 19.199348 19.768118 19.207062 16.488405 17.342228 15.669993 27.184361 26.038248 27.624678