Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00136 ATGACATCAAGTATGTTGAGTGGAGAAAGAAGGTGGACATCAGCCAGACGAGGTGGGATGACTGTTTTAGGAAAGGTTGCTGTTCCAAAACCTATTAACTTACCCAGTCAAAGGTTAGAAAACCATGGCTTGGACCCAAATGTGGAAATTGTACCCAAGGGTACCCTCAGTTGGGGCAATAAATCAACTTCATCGGCAACAAATGCATGGGGTTCTTCATCCGTTTCTCCAAATACAGATAGTGCTTCTGGTTCGCCAAGCCATCTCTGTGGTCGCCCTTCATCTGCTGGAGGTGGCACTCGTCCATCAACAGCTGGGAGTGACAGGTCCCATGAACCTCATGCTAATGCATGGGGACCAAGTTCTAGACCATCGTCTGCCTCTGGGCCTGTGACATTGAACCATGCATCACTCACATCCTTGCGCCCTCACAGTGCTGAAACTAAATCTAGTAGCTCACAATTGTCACGATTTGCAGAAACTTCTGAAAATCCAGTGGCTTGGAATTCTGCTGTTACTACAGAGAAAGTGGGAACTATGGCATGTAAGAGTGATGGGTTTTCTTTGACATCTGGAGATTTTCCTACTCTGGGTTCAGAGAAAGAATGTGTAGGAAAGGATGCTGAGTCACAAGATAACGGGTTTAATGGAGGAGCTACAGTGAAAGAAAGGACTGGGACTTCGGCAATTGATGATCCTAAAAATGTGACTACAACTGTTGCAAGTGCTAATTCCTGGAGAAGTGATAATCTTCCACACAACGATGATGGATCTAGGCCAAATGTAGAGAAATGGCTGGGGCATCCCCAATCTTACCCTGGTGCAAATATCCCTCCCCCACATTATGATGCCTGGCATGGTTCTCCAGTAAACAATCCTCAAGGTGGTGTATGGTATAGAGGTCCTCCACAAGGAGGTCCTCCATACAGAACTCCAGTTGCTCCTGGTAATTTCCCTATGGATCCATTTCTGTATTACCCTCCACAGATTCCCCCTGGTGGTCTTCCCAATCCTCAGCCTCCTCATGGAACTGGACCCATGGGACATCATCCTAAAACTGGAGATATATACAGACCTCCTATGCATGATGGCTTTATTCACCCTGGCATGCCAATTAGACCTGGATTTTACCCAGGTCCAGTTTCCTATGACGGATATTATCGACCTCCCATGGGCTACTGCAATTCAAATGATAGAGATGCACCATTTATGGGAATGCCTGCTGGGCCTGCTGGACCTGGTGTTTACAACAGGTTCTCGGGCCAAGGCCAGAGTGCCTCTGAGCCTGTAAGTTCCCATGGTGTATCTGGTGGAAAGGGTATGGTTCCAGATCAAGTAGAATCTGGTCTTCCTTGCGATAATCAAGGACCATACAAGGTTCTTCTGAAACAGCAGGGAAACAATGGTAAGAACGACGAAAAAGATAGGATAAACTCAACAACCACCAATCAGTTGGTCCTTGAGAAGGCTGACCAACAGAGAGTGTCTTCATGGGAGAATGAATGGGATCATAAAAAGGAAGTTGATTTGAGAAGGAGAAAATTAGGGGTGGAGCCGTATTCTCAGGCTTCTGCCAACCAAGAAGCTCAGTCTTCTGAAAGTATGAAAGTCAAGTCTCATGGAAACACGGGGACTGGTGATGGTTTACTGGAAAAGGCAGATGCTGCTGCTTCTGGTTTCTCTGAAGTTCCCAAATCACTGGCTACTTCCACAAAAGATTCAAGTCTGATTCAGAAGATAGAGGGATTAAATGCAAAAGCACGGGCTTCTGATGTGCGACATGATGCTGCACCTATTTGTAGCAGGGAGGAGCCAGATGAGTTTCAATCTGATGATAAGCACTCTGATCATGTTGTTGCCCATGAAGTGGGTGTTGGTGCTGTTTTTCCCGAAAATAGAGATTTTAATGAAGTCATAGACCCTGCCTCCAGTGAATTACGCTTATCCACTGTGGATAGGAATGTTAAAATACACAGTGGAGCACCCGTCCACAGGAGGCCGAATCGTGGAATGCAAGGGAGAAGTGATCATCATGGCCGTGGAAAAGCCAATTCCCAGGAGGTTGATGGGTGGCATAAAAGACCTCTGTTGGACTCCCCAGGCATGATGACAACTCCCAACCAGGAAAGTTCGGTGCTTGCAAGAGACCACAATGCTTTAGGAGCTTTGAATAAGGTTAAGCCATTTTCTTCGGATAGCCATGGAGATGGACCTGCTCCATCCACAGGTGATTCAAAAGATAGTCAAGCTCAGCGTACAAAGATGAGAGAGCTAGCAAAGCAACGCACCAAACAATTGCAGGAGGAAGAGGAGGAAAGGACTAGGAAACAGAAGGCTAGGGCCTTGGCAAAGCTTGAGGAGTTGAATAGACGTACAGTATCTGGGGAGGGGCCAAATCAGGGGTCTGAAGCTGATAATGATGCTGTAAGAAATAAGCTAGAAGAACCTCACAGAACACTTGGAGATACATCATCGAAGAAACCAAGTAGTGGCAATAAGGAGCAGGCTGTGGCACATATTGAATTGAGATCCTTGGAGCAGGAGCTAAGCATTTCTGATGGAGCTCAAAACAAGAATGCTTATGAGGTGAATGGGGGCGGTGCATCCTTGAAGCACAAGCGTACAGGAAATAAACAAAAACCAAATATTTCATCTGAAAAGACTGAAAAGATTCCCCATTTAATAAAGGAATCAAAAGGTCAGATAGTTGTAGATGACATTCATACAGTTGAGGAGTCCAGCAATATCATTACAGATTCTATTGCCGAACCTTCAACTCATGCAAGAAAGAAAAATAACAAGAGTGGGAAGAACAGGCACAAAGTGGAAGAGGCCTTGATATCTGCACCATCACCTCAGATTTCAAAACATGCAAATCTTACAACGGAAAATGATAAACCAAAGGCTTCTCAACCTGTATTGGATCCACCTTCAGATCCACAACCGCCAATTAATAGGGATGAAAGTCAGTTCAGAGAGCTGCTACCCCAGTTGCCAGTTGTAGAGACACTTGGCAGAGGTAATGGTCAGTGGAAGTCCCAGCATTCTCGCAGGGTGGCAAGAAATGCTCAAAATAGACCAGGAGAAAAGATTAATGGTAGTGATTCTGTTATGTGGGCCCCTGTGAGATCTGTACACAAATCTGAGGTTACTGATGAAACTGTTCCGAAGAATGAAGCAGAGTCTGTTGCTTCATCTGTGAAGATTGATAATCAAGTGCAGAATATTCCAAAAAATAAGCGAGCTGAAAGGGAGATATATGTCCCGAAGCCAGTAGCCAAAGAAATGGCACAGCAAGGAACTATCCATCAAGATACTTCCACAATAAGCCAGGCACCAGATGATAATAAGGCAGATTCAAGCTCTCAAAGTTCTGATAATACTAAATCTGCTGGTGCTGTTTCGGGAAATGTGGGATTTTCCGCAGATCACAGGAACGGGGATGGTAGGCAACCTAAACAAAGCAAGGCACATTCATCGTGGCAGCGACGGGGAGCAACGGAACATGGGCAAGGCTTGCAAGATCAGCCATCTTATGTTTCCAATGCTGGTAATTATGTCCAAAAAACAAATGAATATCAATTACCTGAGAAGGCCACCGGAAGCTCCACCAATGAGTTCGTGAGTCAGGTTGATGAGTGGGATCCACCAGAAGGATGGAATGATCCCAACTACTCGGCCTCTATCCCACCTGCCACTGCAGCTATTGGAAGAGACCAGGGAGTGACAGGCAGGGGAAAACGGTCTCAATCTAAGGGGCACAAGGGTGTAGGGAACAATTATGATCTAAATGAAAAGAAGCATAGAGGTGGAGACAATGAAAAGATTTCTTCCGAATTCGAAGTGCTTGAGGCAGATCAGAAAGATGTATCTGCTGCTGCCAAAGAAAATAGGGGTGTTGGGGAACGTTCAACATCTCATTGGCAACCCAAATCGCGGATGGTCCAACCTCACAATCACCAAAATGTTGATGGTGAAGCTGCACAGACTAATAAAATAGGATCTAGGCAATTCTCACATCGCACAAAAACAACTGATGATTTAGCCCAAAACCAGTATGATACTTCCTCTGGTGCAAGAACCATCCCAGAAGAGGGATCAAATGTTGGTCATCATGTAGCCAGGGGAGAGAAGAAAGTTTCTTCCCGCAAGGAGCGTCCTTACTCCCCAAACCAAGGTTCTATCCATACTGTTGAGGCTGCTCCAGTAAATACAGATGTCAGGCGTGAGCAACAGATGCCTACATTTTATCATAAAGGTGGTGAGAACAATAATCGTTATGGAAGAGGGTCAGAATCCCGTCGGGAAAGGAATACCTCTCAGCATCATAAGCAGCAGCAGCAGCAGCAGCAGCATTGTCCACCTGCTAATAGAGACAGGCAAAGACAAAATCAGCAGTACGAGTACCAACCAGTTGGGCCACACAATAATAAACCGAACATGGATAGACCTAAGGATACCACTCAACATTCAGGCTCAAGGTACGTGGAGAGGGGCCAACAAGGTCAGTCCAGAAGAGATGGTGGGAACTTTTACAAGCAACAAGGTGGACCAGTTTGA 4560 45.64 MTSSMLSGERRWTSARRGGMTVLGKVAVPKPINLPSQRLENHGLDPNVEIVPKGTLSWGNKSTSSATNAWGSSSVSPNTDSASGSPSHLCGRPSSAGGGTRPSTAGSDRSHEPHANAWGPSSRPSSASGPVTLNHASLTSLRPHSAETKSSSSQLSRFAETSENPVAWNSAVTTEKVGTMACKSDGFSLTSGDFPTLGSEKECVGKDAESQDNGFNGGATVKERTGTSAIDDPKNVTTTVASANSWRSDNLPHNDDGSRPNVEKWLGHPQSYPGANIPPPHYDAWHGSPVNNPQGGVWYRGPPQGGPPYRTPVAPGNFPMDPFLYYPPQIPPGGLPNPQPPHGTGPMGHHPKTGDIYRPPMHDGFIHPGMPIRPGFYPGPVSYDGYYRPPMGYCNSNDRDAPFMGMPAGPAGPGVYNRFSGQGQSASEPVSSHGVSGGKGMVPDQVESGLPCDNQGPYKVLLKQQGNNGKNDEKDRINSTTTNQLVLEKADQQRVSSWENEWDHKKEVDLRRRKLGVEPYSQASANQEAQSSESMKVKSHGNTGTGDGLLEKADAAASGFSEVPKSLATSTKDSSLIQKIEGLNAKARASDVRHDAAPICSREEPDEFQSDDKHSDHVVAHEVGVGAVFPENRDFNEVIDPASSELRLSTVDRNVKIHSGAPVHRRPNRGMQGRSDHHGRGKANSQEVDGWHKRPLLDSPGMMTTPNQESSVLARDHNALGALNKVKPFSSDSHGDGPAPSTGDSKDSQAQRTKMRELAKQRTKQLQEEEEERTRKQKARALAKLEELNRRTVSGEGPNQGSEADNDAVRNKLEEPHRTLGDTSSKKPSSGNKEQAVAHIELRSLEQELSISDGAQNKNAYEVNGGGASLKHKRTGNKQKPNISSEKTEKIPHLIKESKGQIVVDDIHTVEESSNIITDSIAEPSTHARKKNNKSGKNRHKVEEALISAPSPQISKHANLTTENDKPKASQPVLDPPSDPQPPINRDESQFRELLPQLPVVETLGRGNGQWKSQHSRRVARNAQNRPGEKINGSDSVMWAPVRSVHKSEVTDETVPKNEAESVASSVKIDNQVQNIPKNKRAEREIYVPKPVAKEMAQQGTIHQDTSTISQAPDDNKADSSSQSSDNTKSAGAVSGNVGFSADHRNGDGRQPKQSKAHSSWQRRGATEHGQGLQDQPSYVSNAGNYVQKTNEYQLPEKATGSSTNEFVSQVDEWDPPEGWNDPNYSASIPPATAAIGRDQGVTGRGKRSQSKGHKGVGNNYDLNEKKHRGGDNEKISSEFEVLEADQKDVSAAAKENRGVGERSTSHWQPKSRMVQPHNHQNVDGEAAQTNKIGSRQFSHRTKTTDDLAQNQYDTSSGARTIPEEGSNVGHHVARGEKKVSSRKERPYSPNQGSIHTVEAAPVNTDVRREQQMPTFYHKGGENNNRYGRGSESRRERNTSQHHKQQQQQQQHCPPANRDRQRQNQQYEYQPVGPHNNKPNMDRPKDTTQHSGSRYVERGQQGQSRRDGGNFYKQQGGPV* 1520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 808666 816223 + CsaV3_1G001360.1 Csa01g00136 514633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00136 1519 MobiDBLite consensus disorder prediction 913 1040 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 849 863 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 1259 1273 - -
Csa01g00136 1519 Pfam BAT2 N-terminus 13 137 IPR009738 -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 519 548 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 1153 1210 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 1303 1363 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 749 791 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 56 90 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 1370 1385 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 658 709 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 462 484 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 952 968 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 119 163 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 669 694 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 1291 1519 - -
Csa01g00136 1519 Coils Coil 752 791 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 1428 1442 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 1099 1135 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 1071 1273 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 54 163 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 1047 1066 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 1443 1473 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 332 354 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 245 280 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 1493 1510 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 1007 1031 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 879 893 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 520 541 - -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 723 893 - -
Csa01g00136 1519 PANTHER PROTEIN MODIFIER OF SNC1 1 1 1514 IPR038808 -
Csa01g00136 1519 MobiDBLite consensus disorder prediction 807 822 - -
Csa01g00136 1519 PANTHER PROTEIN MODIFIER OF SNC1 1 1 1514 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00136 - - - csv:101207575 2934.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g781 . . . . . . . . . . Cma10g00119 Cma11g00088 Car10g00106 Car11g00079 Sed08g0103 . Cpe04g01566 Bhi02g00478 Tan09g2266 Cmetu02g1512 . Hepe09g0213 . . Cla06g01673 Cam06g1861 Cec06g1911 Cco06g1916 Clacu06g1817 Cmu06g1758 Cre06g2575 . . . . . . . . . Blo15g00262 . . Bpe07g00848 . . . . Cmo10g00123 Cmo11g00088 . . . . . Cpe18g00849 . . . . . . . . . . . . . . Lsi06g01564 Csa01g00136 Chy02g02591 Cme02g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006102 0 1 1 0 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00136 Csa_Chr01 FPKM 0.20331 1.658387 0.653881 0.613929 1.254655 1.094635 0.827532 0.0 0.0 0.0