Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00139 ATGTCTGTTAAATTTGCTTCTATTTCTTGCTCGGTTCCTACTCTATCTTCACCCTCCGATGGCCGGAGAAGCTTTCAGCTAAGCTTTTCACGAGGATTATATGGCATTGGCAGCCAACAACGTAGTTTCCAGAACTTAACGTTTGCTGAAGTTGAATCCATCAAGTTAATGTATGGATTGCTGAGGTCTTGGAGCAGATTTCCAAGGAGAAAAAATGTTCTCTCTGCTATTTCAGAGAACCAGTCTCAATGGTGTGAGCAAGTTGAGCTAGAGCGAGTAAATGAGCATCCCACTGATGAAGATATCTCCCTCGAAAACAATTCATTTTTACATTATGAGGGTACTGGTGGGAAACCGGGTTTTATTTCTTTTTACAACCATTCTAAAGAAGGAAAACGGATCCCTTTGTCTAGTGTGCAAAGCAATCAATACAAATTCTTATGGTTTGTTGGTCCGGCTGTCCTCGTAGCTTCTTTCATTTTCCCCTCTCTTTATCTGCGGAAACTACTTTCAAATATCTTTGAGGACTCTCTGTTAACAGATTTCCTTATATTATTCTTCACGGAAGCACTATTCTATTGTGGTGTTGCGGTGTTTCTTTTTTTAATTGATCGTTCAAGGAGAACTGCTGAACCTGACACTCTGAAAAACAGTTATCAAACCCTGTCTAATCAATTTGGACAGAGGATCTCTTCTGTAGCTACCTTAGCACTCAGTTTAATAATACCAATGGTCACCATGGGATTAGTGTGGCCATGGACCGGCCCTGCAGCATCTGCAACACTAGCACCTTACCTTGTTGGGATTGTTGTCCAATTTGCATTTGAACAGTATGCACGACGCAAGAAATCATGTTCATGGCCTGTTATTCCAATTGTCTTTCAAGTTTATAGATTGCATCAACTTAACAGAGCAGCTCAACTGGTGACAGCACTTTCATTTACCATAAAAGGAGCTGAAATGACTCCGAATAACTTGGCAATAAACAGCTCTCTCGGTACACTGTTGAATGTTCTTCAATGTCTTGGAATAATCTGTATCTGGTCTCTCTCAAGTTTTCTTATGAGGTTTTTCCCATCAAATGCTGCAACAGTGCAGTAA 1101 40.51 MSVKFASISCSVPTLSSPSDGRRSFQLSFSRGLYGIGSQQRSFQNLTFAEVESIKLMYGLLRSWSRFPRRKNVLSAISENQSQWCEQVELERVNEHPTDEDISLENNSFLHYEGTGGKPGFISFYNHSKEGKRIPLSSVQSNQYKFLWFVGPAVLVASFIFPSLYLRKLLSNIFEDSLLTDFLILFFTEALFYCGVAVFLFLIDRSRRTAEPDTLKNSYQTLSNQFGQRISSVATLALSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARRKKSCSWPVIPIVFQVYRLHQLNRAAQLVTALSFTIKGAEMTPNNLAINSSLGTLLNVLQCLGIICIWSLSSFLMRFFPSNAATVQ* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 825303 831136 + CsaV3_1G001390.1 Csa01g00139 514636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00139 366 PANTHER OS01G0704200 PROTEIN 7 365 - -
Csa01g00139 366 PANTHER OS01G0704200 PROTEIN 7 365 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00139 - - - csv:105435726 727.243
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00139 Csa-Chr1:825303 Csa01g01898 Csa-Chr1:15897185 3.94E-119 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g779 . . . Bda15g00549 . . . . . . Cma10g00120 . Car10g00107 . . . . Bhi02g00472 Tan09g2262 . . Hepe09g0211 . . Cla06g01671 Cam06g1860 Cec06g1909 Cco06g1914 Clacu06g1816 Cmu06g1757 Cre06g2574 . . . Cone19ag0148 . . . . . . . . . . . . . Cmo10g00124 . . . . . . . . . . . . . . . . . . . . . . Csa01g00139 Chy02g02588 Cme02g01986
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009518 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 0 1 2 1 1 1 1 0 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00139 Csa_Chr01 FPKM 55.447075 63.961861 204.995758 203.164886 106.727806 105.795876 112.242188 97.086525 89.037674 90.960159