Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00140 ATGAAATCTACCGACATTGTGGACTTGTCAAGTGATGATGAGGAAGGATTAAACTTGAAAGCCGTGAAGTTGGAGCCAGAAGTTGATGGCGGCGTGGTTTTACCAAAAGAGCACACAAAGAAGAATACCGTCAAACATGAAGACCTAAATACTGAATTTGTTAGTCAAGGATTTGATGAGAATAGGAGCCCGAATGTTTGGAGTGCTGGTCAGAGTAGCTCTAGTATATTGGATCAGGTGCCATCTCCAGCTGATGATTCTGGCCTTACATCCCCATCTCCCTTGTGTCCTGCACCAGTTTGTCGACAATTCTGGAAAGCTGGGAATTATAATGATGGAGTTGCTTCTACTGTCACTGTTCAAAGTTCCAAGGGCCATCTCCATGTCCACCCTATGTTCCTTCATTCAAATGCTACTTCACACAAATGGGCTTTTGGAGCTGTTGCAGAGCTGCTTGATAACGCAGTTGATGAGATCCCCAACGGAGCTACCTTTGTCAATGTGGATAAAATCTTGAATGCAAGAGATGGAAGTCCTGCTTTGTTAATTCAAGATGATGGAGGTGGAATGGATCCTAAAGCGATGAGGAGGTGTATGAGCTTTGGGTTCTCAGATAAGAAGTCAAAATCTGCTATCGGACAATATGGAAATGGTTTCAAAACCAGCACTATGAGACTTGGTGCAGATGTTATTGTTTTCAGTCGGCACGTGAATAATAGGTCCAGGGTATCAACGCAGAGTATTGGTCTTCTATCTTATACATTTTTGACCCGTTCAGGCTACAACAGAATTGTAGTGCCTATGGTAGATTATCAATATAACACATCAAGTGGCAAAATGGAAATATTGCATGGGAGGGAACGTTTTACATCTAACCTTTCCATACTTCTACAGTGGTCTCCGTACTCATCTGAGTCTGAACTTCTTAAGCAATTTAATGATATCGGATCTCATGGCACAAAAGTAATCATCTATAATTTGTGGTATAATGGAGACGGCAGATTGGAGCTGGACTTCGATACAGATCAGGAGGACATTTGCATTGACGGAGATGTAAAAAAAATGGCTGCTCTCCCCGCATCGAAGGCAATCAATGAGCAGCACATTGCTAATCGATTGCAATATTCTCTCCGTGAATATTTATCAATATTGTATTTGCGGACATCTGAAAATTTCAAGATAGTATTGCGTGGGAGGGTTGTTCTGCATCACAATCTTGCTGATGATCTCAAATATATCCAATACATTTTGTATAAGCCTCATAGTGGTGGACATGTGGAGGGTGTGGTTGTTACTACAATTGGGTTCCTGAAGGAGGCCCCAGATGTCAATATACATGGTTTTAATGTTTACCACAAAAATCGTTTGATTCTGCCATTTTGGAGGGTTGTGAGCTATTCAGAAAGTAGAGGAAGAGGTGTTGTTGGTATTCTCGAAGCAAATTTTATTGAGCCTACACATAATAAACAAGACTTTGAGAGAACTCCTGTTTTACAGAAGCTTGAAGCTCGTTTGAAAGATATGACTTGGGAATACTGGGATTGTCATTGCGGACTTGTTGGGTATCAAGTTAGAAAACAATTCCGTGTGACAACGCCCTCAAAAACACCATTCAACATAAGAGTACCTGCTGGCAAGGAACATCCTCAGATGTTGAATCAACGTGTTCCATTGGAACATCCTCAGATGATGAATCAACGCGTCCCGTTTGCAGTCACAGAGACTAACGGAAGACCTGAACAATTCACCCTGGAAACACCCGGAAAATCTAGAGAAGGAGTATGTATGAAGAGAAAGGCCGATGTTCTCATAGAAGATGAACAGTCTGGAAGTGCTCGTCATCAGAACAACCAACAGGGTAACATTTTGTTGGAACAAAATACGAAGCTTCGTGTAAAGTAA 1902 41.59 MKSTDIVDLSSDDEEGLNLKAVKLEPEVDGGVVLPKEHTKKNTVKHEDLNTEFVSQGFDENRSPNVWSAGQSSSSILDQVPSPADDSGLTSPSPLCPAPVCRQFWKAGNYNDGVASTVTVQSSKGHLHVHPMFLHSNATSHKWAFGAVAELLDNAVDEIPNGATFVNVDKILNARDGSPALLIQDDGGGMDPKAMRRCMSFGFSDKKSKSAIGQYGNGFKTSTMRLGADVIVFSRHVNNRSRVSTQSIGLLSYTFLTRSGYNRIVVPMVDYQYNTSSGKMEILHGRERFTSNLSILLQWSPYSSESELLKQFNDIGSHGTKVIIYNLWYNGDGRLELDFDTDQEDICIDGDVKKMAALPASKAINEQHIANRLQYSLREYLSILYLRTSENFKIVLRGRVVLHHNLADDLKYIQYILYKPHSGGHVEGVVVTTIGFLKEAPDVNIHGFNVYHKNRLILPFWRVVSYSESRGRGVVGILEANFIEPTHNKQDFERTPVLQKLEARLKDMTWEYWDCHCGLVGYQVRKQFRVTTPSKTPFNIRVPAGKEHPQMLNQRVPLEHPQMMNQRVPFAVTETNGRPEQFTLETPGKSREGVCMKRKADVLIEDEQSGSARHQNNQQGNILLEQNTKLRVK* 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 832560 854984 - CsaV3_1G001400.1 Csa01g00140 514637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00140 633 MobiDBLite consensus disorder prediction 608 633 - -
Csa01g00140 633 MobiDBLite consensus disorder prediction 56 89 - -
Csa01g00140 633 MobiDBLite consensus disorder prediction 609 626 - -
Csa01g00140 633 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 144 346 IPR036890 -
Csa01g00140 633 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 146 244 - -
Csa01g00140 633 PANTHER HISTIDINE KINASE-, DNA GYRASE B-, AND HSP90-LIKE ATPASE FAMILY PROTEIN 1 632 - -
Csa01g00140 633 Pfam Morc6 ribosomal protein S5 domain 2-like 375 513 IPR041006 -
Csa01g00140 633 Gene3D - 133 336 IPR036890 -
Csa01g00140 633 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 1 632 IPR045261 GO:0016887
Csa01g00140 633 MobiDBLite consensus disorder prediction 56 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00140 - - - csv:101206362 1286.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00140 Csa-Chr1:832560 Csa04g00537 Csa-Chr4:3559287 5.63E-162 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g776 . . . . . . . . . . Cma10g00121 . Car10g00108 . . . . Bhi02g00461 Tan09g2260 . . Hepe09g0210 . . Cla06g01670 Cam06g1859 Cec06g1908 Cco06g1913 Clacu06g1815 Cmu06g1756 Cre06g2573 . Cone16ag0091 . . . . . . . . . . . . . Bma08g00093 . Cmo10g00125 . . . . . . Cpe18g00848 . . . . . . . . . . . . . . Lsi06g01563 Csa01g00140 . Cme02g01985
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003763 0 11 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 6 2 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00140 Csa_Chr01 FPKM 16.598705 16.586142 13.898629 12.015476 11.869104 8.058597 11.00327 6.567385 6.945708 7.512203