Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00143 ATGGCGGGTCTTTACAGTCTCAATCTCCTCGCCAGTAACTCTCATCACTCATCTTCAACGACCACGTTGGAGACTCTTGCCATTCGGATGGCTTCTTCCGATTATTCTCACTCTCTTACGGATTTCGAATCGGAACATTTCCTGCCGTTTTCGTCGGCGGCCTCCAACACTGCTATTGTGGCGGAGAAGATGAAAACAGCTTGTGCTATTTCCGAGGAGGAGTCCGCCGGTGTAATTAGAGCGAAAATTGCTTCTCATCCTCTTTACCCTAAGCTCGTCGATGCGTTTTTGAACTGCCAAAAGGTCAGCGCACCGCCGGAAGTTGCTAAAATTCTAGACCAATACAACCGTGGTAATAACATCGGCAATGAAAATCCCGGCGTTTCAACTTGCTTGGGTACTGATCCCGAACTTGACGAATTCATGGAAATATTCTGCGAGCTATTAGCCAAATACGAGTTGGATCTGTATCAGCCGTTGGAGGAAGCATCTGCCTTCCTTAAGAACATGGAAAGGCAGTTAAACTTGCTCTGTGAGGACACAACCAGAGGCTACGTTTCCGACAATGAAGCTGCCTCGGAAGAGGATATAAGCGCGCGGGGAGAAGTAGCAGGAAATAAAGATGGTGAGCTGAAGGAACGACTTCTACGCAAGTATGGTGGTCATATTAGTAGCTTGAAGCAGGAATTCTCAAAAACAAAAAAGAAGGAAGGTCTACCAAAAGAAGCCAAACAGATTCTGCTTAACTGGTGGAACTTTCATTCCCAATGGCCTTACCCCACTGTAAGCTTCAAGCCTTTTTTACGGACACAGACAAAGTCGAGTTAG 828 46.5 MAGLYSLNLLASNSHHSSSTTTLETLAIRMASSDYSHSLTDFESEHFLPFSSAASNTAIVAEKMKTACAISEEESAGVIRAKIASHPLYPKLVDAFLNCQKVSAPPEVAKILDQYNRGNNIGNENPGVSTCLGTDPELDEFMEIFCELLAKYELDLYQPLEEASAFLKNMERQLNLLCEDTTRGYVSDNEAASEEDISARGEVAGNKDGELKERLLRKYGGHISSLKQEFSKTKKKEGLPKEAKQILLNWWNFHSQWPYPTVSFKPFLRTQTKSS* 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 865316 871226 - CsaV3_1G001430.1 Csa01g00143 514640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00143 275 ProSiteProfiles ELK domain profile. 210 230 IPR005539 GO:0003677
Csa01g00143 275 Coils Coil 160 180 - -
Csa01g00143 275 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 15 263 - -
Csa01g00143 275 Pfam KNOX2 domain 132 178 IPR005541 GO:0003677|GO:0005634
Csa01g00143 275 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 15 263 - -
Csa01g00143 275 Gene3D - 213 275 - -
Csa01g00143 275 Pfam ELK domain 210 231 IPR005539 GO:0003677
Csa01g00143 275 SMART KNOX1_2 77 121 IPR005540 GO:0003677|GO:0005634
Csa01g00143 275 SMART ELK_2 210 231 IPR005539 GO:0003677
Csa01g00143 275 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Csa01g00143 275 Pfam KNOX1 domain 79 116 IPR005540 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00143 - - - csv:101206846 495.352
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00143 Csa-Chr1:865316 Csa02g01760 Csa-Chr2:17169389 4.94E-53 dispersed
Csa01g00143 Csa-Chr1:865316 Csa05g02319 Csa-Chr5:25644124 2.16E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g773 . . . Bda15g00550 . . . . . . . . . Car11g00082 . . Cpe04g01564 . . . . . . . Cla06g01668 Cam06g1854 . . . Cmu06g1753 . . . . . . . . . . . . . . . . Bma08g00095 . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01561 Csa01g00143 . Cme02g01983
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000818 2 3 3 3 3 3 4 2 2 3 3 2 3 2 3 3 4 4 4 3 3 3 2 4 4 3 3 3 3 3 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00143 Csa_Chr01 FPKM 23.008928 22.682119 29.940176 28.288769 79.98468 95.609337 84.738457 13.667053 13.926579 11.431865