Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00145 ATGACCAACGGAGACGGTGATTGTAAGGGTTTATCGGAAGTTGCCACTTCCGATCCGTTGGATTCGTCGTCACCCTGGGGTATTCAGAATGTCGATGGTAGCTCTATTGGTTCACCGGCTTCTTCCAGGTATTCGTCCTGCGGAGAATCCGAGTTCGAGAGGTATTGCAGCGCGAATTCGGCAATGGGAACGCCAAGTATGCGTAGCACAATTACAGTTTTTAACGACTGCACCGATTCCGAATTTGGGTATGGGAGGAACTTTGGCTTCAGTGATGATGGTGGCCTGGAGAACTTCAGTTTGGGAGGGAGTGAGAGGAATTCGCTGGATACGAATGTAGTAGACTATAGAAAGATAGAACTGCGCGATGAAGCTACTAGTGAAGAGCCGAGTACGAAATATAGGTCCAATGGGTTGGATTTGTATGGAGCGGATGAGCTTATTGATTCACTTGAAGCTAATGGCGAAGTTTTGTGTTGGAAGGTGGAGAGCTCATCGGGTTTATTATGCGGCGTCGATATGACAAACCGATTGGAGAAGGGCGAGGGCAGCAAAAATGGAAAAGAAGGCTTCATTATGAAGAAAGAAGTCTGTGAATTGGGAACGGAGGTGGATGCTGTTCTTGGAGAAGTAACCAACGAAGCAGTTCATGCTGGCTGTTTAGAAGGATGTACGGTTGAGAATGACATGAAATCAGGGCAAAGGTTTGAAGAACCTCTTCTACCTTGCATGGTTGAGAACGAGTCTGACGGTGAGTTGGAAATGGAAGATGATAGGTCCGAGAATGAGTACTCAGGGAGTGAGGATTCAATATATAATTTCATGCACAATAATGCACGCGTTATGTCAGAACCTAACTTGACGAATGAAAATCCATTGCTTATCAATTCATCTGTAGCTTTTGGTTCCGATGATTGGAATGATTTTGAGTGTGAAACTAAGGGATTATCTCTGAAATCCTCGACTGAGGACTCAATCCAGGAAAGGAAACAGCACAATCTGAATTCCTTTGCTCTGATTTTGAATGGTAATCCCATTGGTAACGGAATGATGAGAACAGACGGGACACAGATGCTCTTAGACTGCCAAAAAGATCGGGCAAGCACAAATTTTCCAAAAAAAGTCAACAGTAGTCTTGGGGATTGTGCCACTGTTCCAACTATTGAAAGACCAAAGGAAATGATTCAAGTACGGGACATTCCCATGTGCAAAGTCCAGTCTTTTGAGGATTTGGAGGACATTGCAAACAGTACATTTTTAACTGAAGCTGATTCCTCATATGGTGTTGAGTTAGATCGAGACACGAAGGATATATTTGTTGTTAATAATCAAGCAGGAGATGCTAATGAAACTGCATATAATAGTGAATGTCTTGTTAGTAATATTACTGAAATTGGTACAGGAGCAGAGAAATTTACATTGAAGCCGCAGATGTGTGCAGTGGATGGTAACTCCGTAGAGCAACCTCGTACTCCAGAGACCGAGGATAACAGTGGAACTGTAAACCAAGGCTTAGATAGCCAAGGACTAGGAAATGTGATAGCAAAAGTGGACCCTCTTGGTGATATTTTAACCAATCGACTTTCTACTCATGGTAGTGACTGTTGTGAGGACATGTCACATTCTACTTGCATACCTGAATCAAAAGGTCATCTTTTGCCAGTTGAGTTAGCAAAACTTGAGCTAAATGATTTCTATGATGAAGTGGTTAATGAAATGGAGGAAATACTGCTTGAATCTTCTGATTCTCCAAGGGCTAGATTTACTAATAGATATAAGTTGTCTCAATCTATACCATCTTTACCATTAAGAGATGGAGGATCAACTGCATCTATTTCAGGCATTAACTGTTCTGATCCAAATAACCCTGAAAACTTGAAAATTGATGGGGTTGAAGTGATAGGGGCTAGACAAAAGAGAGGGGATGTATCATTTAGTGAAAGACTGGTTGGGGTGAAGGAGTACACTGTATACAAAATTAGGGTATGGAGTGGCAAGAAACAGTGGGAGGTTGAACGCCGCTACCGAGATTTCTATTCTCTATATTGTCAATTGAAATCATCATTTGCTGATCGTGGCTGGAGTTTACCTTCTCCCTGGTCCTCGGTTGATAATAGATCAAGAAAGTTATTTGGCAGTGCATCTCCAGATATTGTTGCTGAAAGAAGCGTTTTAATTCAAGAGTGTTTATGTTCTATTCTTGAATCAAGATTTTCACCAACAAATCCAAGTCCGTTAGTTTGGTTTTTGTCCTCTCAAGAATCGAACTCCAGTTCTCCTACATCAGATACTGTAGTACCTCATTCAAATGCCAATTCAAGTGCATCTGACTCACAAAAATTGTCCTCTTTGGGGAATTCCATATCACTAATTGTTGAAATTCGACCATACAAATCTACAAAGCAAATACTGGAGCTGCAGCATTATACATGTGCTGGATGTTACAGACAATTTGATGATCAGAAAACTTTGATGAAAGGCTTTGTACAGAGTTTTGGATGGGGCAAACCACGACTCTGTGATTACACCTCTCAGATGTTTTGTTCTTCATGCCATACAAATGAGATGGCAGTCATACCAGCAAGAGTTTTACATCATTGGGACTTCACTCTCTACCCAGTTTCTCAGTTAGCTAAGTCGTACTTGGATTCGATACATGATCAGGTCAATTAA 2673 41.53 MTNGDGDCKGLSEVATSDPLDSSSPWGIQNVDGSSIGSPASSRYSSCGESEFERYCSANSAMGTPSMRSTITVFNDCTDSEFGYGRNFGFSDDGGLENFSLGGSERNSLDTNVVDYRKIELRDEATSEEPSTKYRSNGLDLYGADELIDSLEANGEVLCWKVESSSGLLCGVDMTNRLEKGEGSKNGKEGFIMKKEVCELGTEVDAVLGEVTNEAVHAGCLEGCTVENDMKSGQRFEEPLLPCMVENESDGELEMEDDRSENEYSGSEDSIYNFMHNNARVMSEPNLTNENPLLINSSVAFGSDDWNDFECETKGLSLKSSTEDSIQERKQHNLNSFALILNGNPIGNGMMRTDGTQMLLDCQKDRASTNFPKKVNSSLGDCATVPTIERPKEMIQVRDIPMCKVQSFEDLEDIANSTFLTEADSSYGVELDRDTKDIFVVNNQAGDANETAYNSECLVSNITEIGTGAEKFTLKPQMCAVDGNSVEQPRTPETEDNSGTVNQGLDSQGLGNVIAKVDPLGDILTNRLSTHGSDCCEDMSHSTCIPESKGHLLPVELAKLELNDFYDEVVNEMEEILLESSDSPRARFTNRYKLSQSIPSLPLRDGGSTASISGINCSDPNNPENLKIDGVEVIGARQKRGDVSFSERLVGVKEYTVYKIRVWSGKKQWEVERRYRDFYSLYCQLKSSFADRGWSLPSPWSSVDNRSRKLFGSASPDIVAERSVLIQECLCSILESRFSPTNPSPLVWFLSSQESNSSSPTSDTVVPHSNANSSASDSQKLSSLGNSISLIVEIRPYKSTKQILELQHYTCAGCYRQFDDQKTLMKGFVQSFGWGKPRLCDYTSQMFCSSCHTNEMAVIPARVLHHWDFTLYPVSQLAKSYLDSIHDQVN* 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 877495 883604 + CsaV3_1G001450.1 Csa01g00145 514642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00145 890 Pfam Putative zinc-RING and/or ribbon 838 888 IPR025258 -
Csa01g00145 890 MobiDBLite consensus disorder prediction 1 43 - -
Csa01g00145 890 Pfam PX domain 662 750 IPR001683 GO:0035091
Csa01g00145 890 ProSiteProfiles PX domain profile. 636 757 IPR001683 GO:0035091
Csa01g00145 890 Gene3D - 644 757 IPR036871 GO:0035091
Csa01g00145 890 MobiDBLite consensus disorder prediction 487 505 - -
Csa01g00145 890 MobiDBLite consensus disorder prediction 16 43 - -
Csa01g00145 890 MobiDBLite consensus disorder prediction 484 505 - -
Csa01g00145 890 CDD PX_domain 643 734 - -
Csa01g00145 890 PANTHER DIFFERENTIALLY EXPRESSED IN FDCP 8 HOMOLOG 62 888 - -
Csa01g00145 890 MobiDBLite consensus disorder prediction 759 781 - -
Csa01g00145 890 PANTHER PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN 62 888 - -
Csa01g00145 890 SUPERFAMILY PX domain 649 755 IPR036871 GO:0035091
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00145 - - - csv:101208306 1779.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g766 . . Bda06g00607 . . . . Bma12g01042 . . Cma10g00122 Cma11g00092 Car10g00110 Car11g00084 . . Cpe04g01562 Bhi02g00454 Tan09g2254 . . . . . Cla06g01666 Cam06g1851 Cec06g1903 Cco06g1908 Clacu06g1810 Cmu06g1751 Cre06g2570 Cone2ag0913 Cone16ag0095 . . . . . . . Blo15g00264 . . Bpe07g00845 . . . . Cmo10g00126 Cmo11g00091 . . . . . Cpe18g00847 . . . . . . . . . . . . . . Lsi06g01558 Csa01g00145 Chy02g02584 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006562 2 2 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00145 Csa_Chr01 FPKM 1.538462 1.180454 65.335083 63.37838 4.578497 5.050411 5.796221 3.92997 2.852929 3.659112