Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00150 ATGGCGTTGAATGTTCTTGCTCCGCCTGAAATCAAGGCACTCTCCTTCTTGGAATCCTCTCGCTCCAGACACTTCACCAAACTTCAAGGTGGATCCTCCATTAAGGAGTGTAGAACTATAGTTCATAAAAGAATTCACTGTTCTTCACAGCCTCCTCCTCCAGCTTGGCCTGGACAAGCGGTCGTACCGCCGGGGTATAAGAAATGGGACGGCCGGAAGCCTATCTCCATTCTAGGATCCACGGGTTCCATTGGAACTCAAACATTGGATATTGTGGCAGAGAACCCCGAGAAATTTAAAGTTGTCGGACTTGCAGCCGGCTCTAATATAACTCTCCTTGCAGATCAGGTGAAAACATTTAAACCTCAATTAGTTGCTGTTAGAAATGAGTCCTTAATTGACGAGCTCAAAGAGGCTTTGGCTGATCTTGATGAAAAGCCTGAGATTATTCCTGGTGAGCAGGGAGTAATTGAGGTTGCAAGACACCCGGATGCAGTCACTGTTGTTACAGGAATAGTAGGCTGTGCTGGACTAAAGCCTACTGTTGCTGCAATTGAAGCTGGGAAAGACATAGCCTTGGCCAATAAAGAGACTCTTATTGCTGGTGGTCCCTTTGTTCTTCCCCTTGCCCACAAGCACAATGTAAAGATCCTTCCCGCTGATTCAGAACATTCAGCTATATTCCAGTGTATTCAGGGATTGCCCGAGGGTGCACTTCGCCGCATTATTTTGACCGCATCTGGTGGGGCTTTCAGGGACTTGCCAGTTGAAAAGTTGAAGGACGTTAAAGTTGCAGATGCTTTAAAGCACCCTAACTGGAGCATGGGAAAAAAGATCACTGTCGACTCCGCCACTCTTTTCAACAAGGGTCTAGAAGTCATTGAAGCACACTATTTATTTGGAGCTGAATACGATGACATTGAGATTGTAATCCACCCGCAGTCCATCATACATTCAATGATAGAAACACAGGATTCATCTGTTTTAGCACAATTGGGTTGGCCTGATATGCGCTTGCCCATAGCATACACTATAACATGGCCAGAAAGATTATACTGCTCTGAAGTAACTTGGCCTCGCCTTGATCTTTGCAAGCTAGGTTCGCTCACATTCAAAACTCCAGACAATGTAAAATACCCATCCATGGATCTGGCATATGCTGCTGGACGGGCAGGTGGAACCATGACTGGAGTCCTTAGTGCAGCTAACGAGAAGGCGGTGGAAATGTTCATTGATGAAAAAATCAGCTACTTGGATATTTTTAAGGTTGTGGAGCTAACATGTGACAAGCATCAAAACGAATTGATCACTGCACCTTCTCTTGAGGAGATCGTACATTACGACCTATGGGCTAGGGATTACGCTGCAAATTTGCAGTCGTCTTCCTCTTTTAGTCCTGTAGCTGCATAA 1410 45.46 MALNVLAPPEIKALSFLESSRSRHFTKLQGGSSIKECRTIVHKRIHCSSQPPPPAWPGQAVVPPGYKKWDGRKPISILGSTGSIGTQTLDIVAENPEKFKVVGLAAGSNITLLADQVKTFKPQLVAVRNESLIDELKEALADLDEKPEIIPGEQGVIEVARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDLPVEKLKDVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPIAYTITWPERLYCSEVTWPRLDLCKLGSLTFKTPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCDKHQNELITAPSLEEIVHYDLWARDYAANLQSSSSFSPVAA* 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 965346 972606 - CsaV3_1G001500.1 Csa01g00150 514647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00150 469 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 73 221 IPR036291 -
Csa01g00150 469 Coils Coil 126 146 - -
Csa01g00150 469 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 365 459 IPR036169 -
Csa01g00150 469 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 75 458 IPR003821 GO:0008299|GO:0030604|GO:0046872
Csa01g00150 469 Gene3D - 377 462 - -
Csa01g00150 469 TIGRFAM Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 73 456 IPR003821 GO:0008299|GO:0030604|GO:0046872
Csa01g00150 469 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 217 300 IPR013644 GO:0005515
Csa01g00150 469 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 198 335 - -
Csa01g00150 469 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 1 462 IPR003821 GO:0008299|GO:0030604|GO:0046872
Csa01g00150 469 PIRSF Dxp_reductoisomrs 72 465 IPR003821 GO:0008299|GO:0030604|GO:0046872
Csa01g00150 469 Gene3D - 66 221 - -
Csa01g00150 469 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE-RELATED 1 462 - -
Csa01g00150 469 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 75 203 IPR013512 GO:0070402
Csa01g00150 469 Pfam DXP reductoisomerase C-terminal domain 332 453 IPR026877 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00150 K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] - csv:101207716 936.791
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g745 . . Bda06g00595 . . . . . . . Cma10g00125 . . . . . . . . . . . . . Cla06g01661 Cam06g1846 Cec06g1897 Cco06g1902 Clacu06g1805 Cmu06g1746 Cre06g2565 Cone2ag0907 Cone16ag0103 . . . . . . . . . . Bpe07g00836 . . . . Cmo10g00130 . . . . . . Cpe18g00844 . . . . . . . . . . . . . . . Csa01g00150 Chy02g02578 Cme02g01980
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009834 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00150 Csa_Chr01 FPKM 7.466882 8.212014 27.226713 25.081118 34.010593 35.777958 29.824093 34.643063 34.613892 34.256336