Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00154 ATGCCGGGAATTGTCATGGATGAAATCAATGAAGAAAGGGCTGTGAATAAACATAATGGTTCTTCGATTCATATTGAAGAGTCGTATGGAAACAAGTCGCCGAGGAGCGGGTTGAGTCTTCAGAGCCCTGGAAGTGTTCATGTTGATTTCCCTGTTGATGGCTTGGTTGACACCTCTATTGAGAAGCTTTATGAGAATGTTTGTGATATGCAAAGTTCGGATCAGTCACCTTCAAGGCGTAGCTTTGGTTCTGATGGTGAGGAATCAAGGATTGATTCTGAACTGAATCATCTTGTAGGAGGAGAGATGAGGGAGGTAGAGATAATAAAGGAGGAAGAAGATATTGCTGAGAAGCATGAACATGATTTTCCTGTTGATTCCATGAATCATTCACCGTCTGCAGATAAGAAGGAGAAAGCTGAAAATAGCCAACCTGGTAGCTCAAAACGTCCGTCTGGAAGAAAATCTCCTCACCTGCAATTGGAACACGAGACATCTCCAAAATCAAGTCCCAGGGGCAAGGGCTTGATGGATAAACCCCCTATTAGCAGAAAGAATGAAAAGAATTCGAAAAAAAATAGTCCGGGTGCTGCTCAATTAAAGAAACAGAAAGATTCACCTTTGAGGGGCTCGAAAATGCAGAATGGAAGTGAGGATTTCGAGGAATTAATGTTGGATAATCCAGATCTAGGGCCCTTTCTACTTAAGCAAGCAAGGAATTTAGTTTCGTCAGGGGAGAATCTGCAGAAAGCTCTTTTAATAGCACTTCGTGCTGCAAAAGCTTTTGAACTATCTGCAAATGGCAAACCCAACTTAGAACTTGTTATGTGTTTGCACGTCACAGCAGCAATATACTGCAGCTTAGGCCAGTACAGTGAGGCTATACCTCTATTGGAGCATTCAATTGAGATTCCTGCCATCGAGGAAGGCCACGAGCATGCACTGGCTAAATTTGCAGGCCACATGCAGTTGGGTGATACGTATGCAATGCTGGGTCAGCTGGAAAATTCTCTAGTCTGTTATACAACTGGGTTAGAGGTCCAGAAACAAGTCCTAGGAGAAACAGACCCAAGAGTTGGGGAGACCTATAGGTATTTAGCTGAAGCCCATGTTCAAGCCTTGCGATTTGACGAGGCCGAGAAATTTTGTCAAATGGCTCTCGATATTCACAAAAAGAATGTTGGCCCTGCTTCTCTTGAGGAGGCTGGAGATAGGAGGCTTATGGGCCTCATATGTGAAACAAAAGGAGATCATGAAGCTGCGCTTGAGCATTTAGTTTTAGCCAGCATGGCCATGGTAGCAAATGGCCAAGAGACTGATGTGGCTGCAGTTGATTGCAGTATTGGAGATTCATACTTATCCTTGTCCCGTTACGACGAGGCTGTTTTTGCTTATCAGAAAGCCCTCACTGTTTTCAAAACCACCAAGGGAGAAAACCATCCAGCAGTTGGTTCAGTATTTGTTCGTCTTGCTGATTTGTACAACAAGACTGGAAAAATGAGGGAGTCAGTATCATACTGTGAAAACGCCCTTCGAATTTATGAAAAGCCTGTCCCTGGAATTCCTCCGGAGGAGATTGCTAGTGGTCTTACTGATATTGCAGCTATTTATGAATCAATGAACGAAGTTGAGCAAGCAGTCAAATTATTGCACAAGGCCTTGAAGATATATAATGATGCTCCGGGACAGCAAAACACCATTGCTGGAATAGAAGCCCAGATGGGTGTCTTGTATTATATGCTGGGGAACTATTCTGAATCTTACAACTCCTTCAATAATGCAATTCCAAAGCTTCGCAACAGCGGAGAGAAAAAATCTGCTTTCTTTGGTATAGCCCTTAATCAAATGGGGCTTGTGTGTGTTCAGAAATACGCTATAAACGAAGCTGTAGAGTTATTTGAAGAAGCCAAGAGCATACTAGAGCAAGAATATGGACCTTATCATCCTGATACTCTCGGGGTATATAGCAACCTTGCTGGAACATACGATGCAATTGGCAGGTTGGATGATGCAATTGAAATCTTGGAGTATGTTGTTGGCATGCGAGAGGAAAAACTTGGGACAGCCAATCCTGACGTTGACGATGAGAAGAGAAGATTGTCCGAGTTGTTGAAAGAAGCTGGTAGAGTTCGGAGCCGAAAGGCGAGATCACTCGAGACTCTTCTTGATGCCAATGCTCATACTGTAAACAGTAAAGGAATTCAGGTTTGA 2211 43.33 MPGIVMDEINEERAVNKHNGSSIHIEESYGNKSPRSGLSLQSPGSVHVDFPVDGLVDTSIEKLYENVCDMQSSDQSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIKEEEDIAEKHEHDFPVDSMNHSPSADKKEKAENSQPGSSKRPSGRKSPHLQLEHETSPKSSPRGKGLMDKPPISRKNEKNSKKNSPGAAQLKKQKDSPLRGSKMQNGSEDFEELMLDNPDLGPFLLKQARNLVSSGENLQKALLIALRAAKAFELSANGKPNLELVMCLHVTAAIYCSLGQYSEAIPLLEHSIEIPAIEEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKQVLGETDPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAGDRRLMGLICETKGDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTTKGENHPAVGSVFVRLADLYNKTGKMRESVSYCENALRIYEKPVPGIPPEEIASGLTDIAAIYESMNEVEQAVKLLHKALKIYNDAPGQQNTIAGIEAQMGVLYYMLGNYSESYNSFNNAIPKLRNSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEQEYGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKARSLETLLDANAHTVNSKGIQV* 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 986550 990279 - CsaV3_1G001540.1 Csa01g00154 514651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00154 736 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 725 - -
Csa01g00154 736 Coils Coil 693 713 - -
Csa01g00154 736 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 725 - -
Csa01g00154 736 MobiDBLite consensus disorder prediction 15 46 - -
Csa01g00154 736 SUPERFAMILY HCP-like 415 558 - -
Csa01g00154 736 MobiDBLite consensus disorder prediction 21 43 - -
Csa01g00154 736 ProSiteProfiles TPR repeat profile. 527 560 IPR019734 GO:0005515
Csa01g00154 736 SUPERFAMILY TPR-like 278 595 IPR011990 GO:0005515
Csa01g00154 736 MobiDBLite consensus disorder prediction 120 144 - -
Csa01g00154 736 Gene3D Tetratricopeptide repeat domain 271 428 IPR011990 GO:0005515
Csa01g00154 736 MobiDBLite consensus disorder prediction 155 169 - -
Csa01g00154 736 MobiDBLite consensus disorder prediction 81 104 - -
Csa01g00154 736 MobiDBLite consensus disorder prediction 120 216 - -
Csa01g00154 736 Pfam Tetratricopeptide repeat 323 392 - -
Csa01g00154 736 Pfam Tetratricopeptide repeat 441 516 - -
Csa01g00154 736 Pfam Tetratricopeptide repeat 611 678 - -
Csa01g00154 736 MobiDBLite consensus disorder prediction 67 104 - -
Csa01g00154 736 Gene3D Tetratricopeptide repeat domain 621 726 IPR011990 GO:0005515
Csa01g00154 736 Pfam Tetratricopeptide repeat 282 304 IPR019734 GO:0005515
Csa01g00154 736 ProSiteProfiles TPR repeat profile. 442 475 IPR019734 GO:0005515
Csa01g00154 736 SUPERFAMILY TPR-like 568 709 IPR011990 GO:0005515
Csa01g00154 736 SMART tpr_5 275 308 IPR019734 GO:0005515
Csa01g00154 736 SMART tpr_5 568 601 IPR019734 GO:0005515
Csa01g00154 736 SMART tpr_5 318 351 IPR019734 GO:0005515
Csa01g00154 736 SMART tpr_5 652 685 IPR019734 GO:0005515
Csa01g00154 736 SMART tpr_5 527 560 IPR019734 GO:0005515
Csa01g00154 736 SMART tpr_5 442 475 IPR019734 GO:0005515
Csa01g00154 736 SMART tpr_5 484 517 IPR019734 GO:0005515
Csa01g00154 736 SMART tpr_5 360 393 IPR019734 GO:0005515
Csa01g00154 736 SMART tpr_5 610 643 IPR019734 GO:0005515
Csa01g00154 736 Gene3D Tetratricopeptide repeat domain 429 610 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00154 - - - csv:101208453 1418.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00154 Csa-Chr1:986550 Csa04g00686 Csa-Chr4:4664633 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00154 Csa_Chr01 FPKM 1.576955 1.421867 5.117658 5.107173 5.671528 4.516846 5.366242 0.127112 0.0 0.0