Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00155 ATGGCGCCGATGTCGAGGAGGTCGAAGGATGATGCGTTGGTGAAGGCGGCTTTAGGTTTTAGAGTGTGTGAAGTGGCAGTTTGTTTGATTTCTTTTTCGGTTATGGCGTCTGATAAAACGCAGGGTTGGAGTGGCGATTCATTTGATCGGTACAAGGAATACAGGTACTGCCTTACTGTGAATATAATTGCATTCGTGTATGCCGCATTTCAAGCATTTGACCTTGTCTTTACTCTAATCAAGAAGAACCATATGATACGCCATCAATTTCGTTGTTATTTTGACTTCTTCATGGATCAGGTATTGGCATATCTTCTCATATCATCATCTTCCTCGGCTGCCACACGTGTTGACGACTGGCAATCGAATTGGGGAAAAGACGAGTTCACGCAGCTAGCGAGCGCATCGGTCAGCATGTCCTTCCTTGCCTTTGTTGCATTTGCTGTTAGTTCACTTATCTCTGGTTACAACCTTTGCACCCGCGATCCTGCATGA 495 45.25 MAPMSRRSKDDALVKAALGFRVCEVAVCLISFSVMASDKTQGWSGDSFDRYKEYRYCLTVNIIAFVYAAFQAFDLVFTLIKKNHMIRHQFRCYFDFFMDQVLAYLLISSSSSAATRVDDWQSNWGKDEFTQLASASVSMSFLAFVAFAVSSLISGYNLCTRDPA* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 998651 1001364 - CsaV3_1G001550.1 Csa01g00155 514652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00155 164 Pfam Casparian strip membrane protein domain 12 146 IPR006702 -
Csa01g00155 164 PANTHER CASP-LIKE PROTEIN 4A3 3 162 - -
Csa01g00155 164 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 3 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00155 - - - csv:101208694 320.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00155 Csa-Chr1:998651 Csa05g02905 Csa-Chr5:29556103 8.86E-61 dispersed
Csa05g01838 Csa-Chr5:21714076 Csa01g00155 Csa-Chr1:998651 1.34E-06 dispersed
Csa01g00155 Csa-Chr1:998651 Csa03g03029 Csa-Chr3:28698684 1.45E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g737 . . Bda06g00592 Bda15g00571 Bpe12g00594 . . Bma12g01034 . . Cma10g00127 Cma11g00098 Car10g00118 Car11g00098 Sed08g0128 . Cpe04g01551 Bhi02g00437 Tan09g2240 Cmetu09g0010 . Hepe09g0197 . . Cla06g01659 Cam06g1844 Cec06g1895 Cco06g1900 Clacu06g1803 . Cre06g2563 . . Cone13ag0136 . . . . . Blo13g00056 Blo15g00270 . . Bpe07g00834 . . Bma08g00168 . Cmo10g00133 Cmo11g00098 . . . . . . . . . . . . . . . . . . . . Lsi06g01549 Csa01g00155 Chy02g02575 Cme02g01965
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006246 2 1 1 2 2 1 2 1 1 1 1 0 2 1 1 2 0 1 1 1 1 1 1 1 1 1 1 4 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00155 Csa_Chr01 FPKM 17.118511 17.209194 20.121706 20.925961 29.084864 30.883154 30.972086 16.124306 16.102852 16.56143