Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa01g00157 | ATGGCTGCTCGAGGCGTCGATTTCAAGTGGTATGACGGGTTTTTCTTGTCGATGCTCGCGACTAGTGTAGTAATAGTTTCAATCAATTGGAAGCGGTATCACACTTGTGTACATCCCTTGCATATATGGATCGTGGTTGATTATACTACCGTCTTTGTTTTTCGCCTGCTGATGTTTGTGGATAATGGACTTGCCGCTGGAATGGGTTTGGACTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCGGTTCTTGCAGTTTTGCTATATCCGTTTCTTTGGGCCTGGACGGCCATTGGTACTATATGGTTTAGGGAAGCCCATAAATGTCTTCCTGAGCAAGGCCAGAAATGGGGGTTCCTAATTTGGTTACTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCACAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGGTCCGAGTACCTGATTGGGCTTTTGAAGCCGCTGGACAAGAAACAAGGGTAATGGGCCAAGATGCTGCTGCATACCATCCTGGACTTTACTTGACTCCTGCTCAGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTTAGGTTAAAGGCTGTTCCAACGGATTGCAGTGAATGCCCTATCTGCTTAGAAGAGTTTCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCACGTAGGATGCATTGATGAGTGGCTTCGACTAAACGTGAAATGCCCTAGATGTCGTTGCTCGGTCTTCCCAAACCTTGATCTCAGTGCTCTGTCCAATCTTCGTTCTGATACTGATAGACCATCTGCAAGTGTTCTTACGGCCAACCGTTATGTGGGATCTCAACCTTCCAGCCAAAGTTATCTGGTGAGATTGCAAGGTCTGCTTCGACCTGTTCGCACCGAAGAAAATGATGCACACGGTGATTTAGGGCCTGCTAGTGCTTTAGAAGCTGCTGAGAATGGGTCTGCACATGAACAAACCATACCAGAACGGTCTCCTGTAAGACCGATGTCTTTGATTCAGTCCACATCACAACTCTAG | 1134 | 46.74 | MAARGVDFKWYDGFFLSMLATSVVIVSINWKRYHTCVHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLAVLLYPFLWAWTAIGTIWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMVRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRSDTDRPSASVLTANRYVGSQPSSQSYLVRLQGLLRPVRTEENDAHGDLGPASALEAAENGSAHEQTIPERSPVRPMSLIQSTSQL* | 378 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 1012940 | 1016683 | - | CsaV3_1G001570.1 | Csa01g00157 | 514654 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa01g00157 | 377 | MobiDBLite | consensus disorder prediction | 333 | 377 | - | - | |
| Csa01g00157 | 377 | Pfam | Ring finger domain | 234 | 276 | IPR001841 | - | |
| Csa01g00157 | 377 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 281 | IPR013083 | - | |
| Csa01g00157 | 377 | SMART | ring_2 | 235 | 275 | IPR001841 | - | |
| Csa01g00157 | 377 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 357 | - | - | |
| Csa01g00157 | 377 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 357 | IPR044793 | GO:0004842|GO:0010182 | |
| Csa01g00157 | 377 | SUPERFAMILY | RING/U-box | 216 | 284 | - | - | |
| Csa01g00157 | 377 | ProSiteProfiles | Zinc finger RING-type profile. | 235 | 276 | IPR001841 | - | |
| Csa01g00157 | 377 | CDD | RING-H2_RNF111_like | 234 | 278 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Csa01g00843 | Csa01g00157 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa01g00157 | Csa-Chr1:1012940 | Csa04g01247 | Csa-Chr4:11006948 | 8.03E-16 | dispersed | |
| Csa03g03675 | Csa-Chr3:32702214 | Csa01g00157 | Csa-Chr1:1012940 | 1.05E-12 | transposed | |
| Csa01g00157 | Csa-Chr1:1012940 | Csa01g00843 | Csa-Chr1:5282234 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa01g00157 | K16284 | - | csv:101208939 | 783.482 |