Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00159 | ATGAAAGAGAACAATGATGGGTTTGTTCGTGCGGATCAGATTGATCTCAAGAGCTTAGATGAACAGCTTGAGAGGCATCTTAGTAGAGCTTTGACTATGGAGAAGAACAAGAAGAAAGATGAAGATACCGGCAATAGCTTTCTCACTTCTGCTCCTATCGCTCGTAGTAGGTCTACTAAAGTCGCTGCTAAGGACCGGCAAGAGTGGGAGATCGATCCCTCTAAATTGATTATCAAGAGCGTCATTGCTCGTGGTACTTTTGGCACTGTCCACCGCGGCGTTTATGACGGACTAGATGTTGCCGTCAAGTTGCTGGATTGGGGAGAAGAAGGTCACAGGACAGAAGCTGAAATTGCTTCACTGAGGGCGGCTTTTAAACAAGAAGTTGCTGTTTGGCATAAACTAGAGCATCCAAATGTTACGAAGTTTATAGGGGCAACAATGGGCTCAGCAGAGTTACAGATTCAAACTGAAAATGGTCTAATAGGCATGCCAAGCAACATATGTTGTGTTGTGGTGGAATATCTTGCCGGGGGTGCTCTTAAATCTTATCTCATAAAAAACAGGAGAAGAAAGCTAGCTTTCAAGGTGGTTGTCCAGCTGGCCCTTGATCTTGCTAGAGGGTTGAGTTACCTTCATTCGCAGAAAATCGTTCACAGAGATGTAAAGACCGAAAACATGCTATTGGACAAAACACGTACAGTCAAAATTGCTGATTTTGGTGTTGCTAGAGTTGAGGCCTCAAATCCCAATGACATGACTGGGGAGACCGGGACACTTGGTTACATGGCTCCAGAGGTTCTCAATGGCAACCCATATAACAGGAAATGTGATGTGTACAGCTTCGGTATCTGCCTGTGGGAAATTTATTGCTGTGACATGCCATATCCCGACCTTAGTTTCTCTGAAGTAACCTCTGCCGTGGTTCGTCAGAATCTGAGGCCAGAGATACCGAGATGTTGCCCAAGCTCTCTAGCAAATGTAATGAAGCGTTGCTGGGATGCAACCCCAGACAAGCGACCCGAGATGGATGAAGTAGTTTCCATGTTGGAGGCCATTGACACTTCCAAGGGTGGAGGTATGATTCCTGTTGATCAAGCTCAGGGTTGTCTATGCTTTCGAAAATATAGAGGGCCCTAA | 1140 | 45.61 | MKENNDGFVRADQIDLKSLDEQLERHLSRALTMEKNKKKDEDTGNSFLTSAPIARSRSTKVAAKDRQEWEIDPSKLIIKSVIARGTFGTVHRGVYDGLDVAVKLLDWGEEGHRTEAEIASLRAAFKQEVAVWHKLEHPNVTKFIGATMGSAELQIQTENGLIGMPSNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVSMLEAIDTSKGGGMIPVDQAQGCLCFRKYRGP* | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1031695 | 1035610 | + | CsaV3_1G001590.1 | Csa01g00159 | 514656 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00159 | 379 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 217 | 229 | IPR008271 | GO:0004672|GO:0006468 | |
Csa01g00159 | 379 | Gene3D | Phosphorylase Kinase; domain 1 | 65 | 159 | - | - | |
Csa01g00159 | 379 | ProSiteProfiles | Protein kinase domain profile. | 76 | 353 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00159 | 379 | CDD | STKc_MAP3K-like | 82 | 350 | - | - | |
Csa01g00159 | 379 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 1 | 373 | - | - | |
Csa01g00159 | 379 | PRINTS | Tyrosine kinase catalytic domain signature | 173 | 186 | IPR001245 | GO:0004672|GO:0006468 | |
Csa01g00159 | 379 | PRINTS | Tyrosine kinase catalytic domain signature | 211 | 229 | IPR001245 | GO:0004672|GO:0006468 | |
Csa01g00159 | 379 | PRINTS | Tyrosine kinase catalytic domain signature | 277 | 299 | IPR001245 | GO:0004672|GO:0006468 | |
Csa01g00159 | 379 | PRINTS | Tyrosine kinase catalytic domain signature | 321 | 343 | IPR001245 | GO:0004672|GO:0006468 | |
Csa01g00159 | 379 | Pfam | Protein tyrosine and serine/threonine kinase | 78 | 350 | IPR001245 | GO:0004672|GO:0006468 | |
Csa01g00159 | 379 | SMART | serkin_6 | 76 | 353 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g00159 | 379 | MobiDBLite | consensus disorder prediction | 30 | 44 | - | - | |
Csa01g00159 | 379 | PANTHER | - | 1 | 373 | - | - | |
Csa01g00159 | 379 | Gene3D | Transferase(Phosphotransferase) domain 1 | 177 | 366 | - | - | |
Csa01g00159 | 379 | Coils | Coil | 16 | 36 | - | - | |
Csa01g00159 | 379 | SUPERFAMILY | Protein kinase-like (PK-like) | 56 | 350 | IPR011009 | - | |
Csa01g00159 | 379 | MobiDBLite | consensus disorder prediction | 30 | 50 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00159 | Csa-Chr1:1031695 | Csa07g01691 | Csa-Chr7:17390292 | 0 | dispersed | |
Csa03g04328 | Csa-Chr3:37843118 | Csa01g00159 | Csa-Chr1:1031695 | 1.45E-20 | transposed | |
Csa01g00159 | Csa-Chr1:1031695 | Csa03g03932 | Csa-Chr3:34431060 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77733 | PF07714 | PK_Tyr_Ser-Thr | 3.80E-63 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00159 | - | - | csv:101209182 | 768.844 |