Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00160 ATGGCTGCTGCTCGTAGAGGAATCTCTTCTTTACTCTCTCGTTCTATCTTAGCTTCTTCTTCTTCTTCTACTGTTAATGGGTTTGGTTCTCTTCTTCAATCTCATGGAAGAGTTTCAAGGTTCCTTGGAAGAGGATATGGATTTAGCACATCCGCTTTGGCAGAGGAGGAACTTATCACTCCTCCTGTTCAGATAAACTACACTCAAAATCTGATCAATGGCCAGTTTGTTGATTCTGCATCCGGAAAAACGTTTCCAACTTACGATCCTCGCACTGGGGAAGTGATTGCTCATGTTGCCGAGGGTGATGCTGAGGATGTCAACCGTGCAGTATCAGCTGCACGAAAGGCTTTCGACGAGGGGCCATGGCCGAGAATGTCTGCTTATGAACGATCGAGGATATTGTTACGGTTTGCAGATTTGATTGAGAAACATACTCCTGAACTTTCAGCATTGGAAACATGGAACAATGGGAAACCTTACGAACAATCGCTTAAATCTGAATTACCATTACTCGTGCGCTTGTTTCACTATTATGCAGGCTGGGCAGACAAAATTCATGGATTAACAGTTCCAGCTGATGGAAATCATCATGTTCAAGTATTGCATGAACCAATTGGAGTTGCAGGACAAATAATTCCATGGAACTTTCCTCTTATTATGTTTGCTTGGAAAGTTGGTCCTGCTTTAGCTTGTGGCAACACCGTTGTCCTAAAAACTGCAGAGCAAACACCTCTGACTGCTCTTTATGTGGCTAAGTTATTACACGAGGCAGGTCTTCCTCCAGGGGTTCTAAATATCGTTTCAGGCTATGGTCCAACCGCAGGTGCTGCCCTTGCTAGCCATATGGATGTGGACAAGCTAGCTTTCACCGGATCAACAAGCACGGGAAAAGTTGTACTCGAATTGGCAGCAAAGAGCAATTTGAAGCCAGTGACACTAGAGCTTGGAGGGAAATCACCTTTCATTGTTTGTGAGGATGCAGATGTTGATAAGGCTGTGGAGCTTGCTCATTTTGCTCTTTTTTTCAATCAGGGGCAATGTTGTTGTGCCGGGTCTCGTACTTTTGTGCACGAGCGTGTACACGAGGAATTTGTCGAAAAGTCGAAGGCACGTGCCCAAAGACGTGTTGTTGGTGACCCTTTCAAGAAGGGTGTTGAACAGGGTCCTCAGATTGACTCGGATCAATTTGAAAAAGTCCTAAGATATATCAAATCTGGCATTGAAAGCAATGCTACTTTGGAATGTGGAGGTGGTAGACTTGGGTCCAAGGGGTACTTCATCGAGCCAACAGTTTTCTCAAATGTTAAGGACGATATGTTGATAGCAAAGGATGAAATCTTTGGTCCAGTACAATCCATCCTGAAATTCAAGGACATTGATGAAGTAATTCATAGAGCAAACTCAACTCGTTACGGTCTAGCATCAGGAATTTTCACATCGAACATCGACACAGCCAACACATTAATACGAGGATTGAGAACGGGGACCGTGTGGGTGAATTGCTTCGACATCTTCGACGCCGCAATACCATTCGGCGGGTATAAGATGAGTGGAATAGGAAGGGAGAAGGGAATTTACAGCCTCCAAAACTACTTACAAGTAAAGGCTGTTGTTACACCTCTCAAGAATCCAGCATGGTTGTGA 1647 44.32 MAAARRGISSLLSRSILASSSSSTVNGFGSLLQSHGRVSRFLGRGYGFSTSALAEEELITPPVQINYTQNLINGQFVDSASGKTFPTYDPRTGEVIAHVAEGDAEDVNRAVSAARKAFDEGPWPRMSAYERSRILLRFADLIEKHTPELSALETWNNGKPYEQSLKSELPLLVRLFHYYAGWADKIHGLTVPADGNHHVQVLHEPIGVAGQIIPWNFPLIMFAWKVGPALACGNTVVLKTAEQTPLTALYVAKLLHEAGLPPGVLNIVSGYGPTAGAALASHMDVDKLAFTGSTSTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERVHEEFVEKSKARAQRRVVGDPFKKGVEQGPQIDSDQFEKVLRYIKSGIESNATLECGGGRLGSKGYFIEPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIDEVIHRANSTRYGLASGIFTSNIDTANTLIRGLRTGTVWVNCFDIFDAAIPFGGYKMSGIGREKGIYSLQNYLQVKAVVTPLKNPAWL* 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1036221 1040968 - CsaV3_1G001600.1 Csa01g00160 514657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00160 548 CDD ALDH_F2BC 65 540 - -
Csa01g00160 548 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 82 538 IPR016162 GO:0016491
Csa01g00160 548 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 320 509 IPR016163 GO:0016620
Csa01g00160 548 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 40 548 - -
Csa01g00160 548 SUPERFAMILY ALDH-like 64 542 IPR016161 GO:0016491
Csa01g00160 548 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 342 353 IPR016160 GO:0016491
Csa01g00160 548 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 314 321 IPR029510 GO:0016491
Csa01g00160 548 Pfam Aldehyde dehydrogenase family 76 538 IPR015590 GO:0016491
Csa01g00160 548 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 40 548 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00160 Csa-Chr1:1036221 Csa02g00312 Csa-Chr2:2115327 0 dispersed
Csa01g00788 Csa-Chr1:4990343 Csa01g00160 Csa-Chr1:1036221 1.65E-15 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00160 K00128 - csv:101209430 1064.29