Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00161 ATGCATAACATAGCGTATTCTCGATTAGGTGGACTTCAGAAATCTCTTACTCTATACAGAAAAGTTCCATGGTGGGATAAAATCTTAGAACCCGATTCCGAGTTTGTTGTTCGATGGAATCTCATTTTTCTCGTTACCTGTTTGTTTGCTCTCTTCATCGACCCTCTTTACTTTTACCTTATCATCATCGGCGGCCCTGGTTGTATGCGTTTCAACACTCGCCTTGGTATCGTCATCACTTTCTTCCGCACCATTGTCGATTTCTTCTCTCTGTTTCACATTTCTATGAAGTTTCGCACCGCTTTTGTCGCCCCTAATTCTAGAGTTTTTGGCCGTGGTGATCTCGTTATGGACCCTTCTGCCATTGCTATGCGCTACCTCAAGAAGGATTTTCTCATTGATCTTGCTGCTACACTGCCTCTGCCTCAGATTGTGATTTGGTTTGTTCTTCCAGCATTGAAAAACCCATCAGCATCCCATGCAAACCACACTCTTGCATTGATTGTCCTCATTCAGTATGCACCCAGGCTGTTTGTTATATTTCCTCTGAACAGACAGATCAATAAAACCACTGGTGCGATTGCCAAAACTGCTTGGGCTGGTGCTGCCTACAATCTCCTTCTCTATTTGCTTGCTAGCCATGTTATAGGAGCTGCATGGTATGTAGCATCAATTCAACGTCAAGACGAGTGTTGGAAATTAGAATGTAGGAAGGAGATGAATAAAACTCACTCTCCTTCTTGTAAGCCTATTTTTCTTGATTGTGAAAGTTTGGATAAGCCTGAAAGAAAAGCTTGGCTAAGATCTACTCATGTTCTTACAAATTGTGATGCATTCAATGATGAAAAGAACTTTGAGTTTGGAATGTTTGCTGATGCGTTTACTGATGAAGTTGCTTCTGCAGTATTTTATGAGAAGTACTTCTACTGCCTTTGGTTTGGTTTAAAGAGTTTGAGTGCATATGGACAAAATTTAACGACAAGCACTTATAGTGGAGAAATTTTGTTTAGCATTGTGATTTGCTCCATGGGATTGGTTCTGTTTTCACATCTCATAGGCCAAGTTCAGAGTTACCTGCAATCCACAACTGCTAGACTTGAACAGTGGAGAGTAAAACGAAGAGACACAGAGGAATGGATGACGCATAGACAGTTACCGCTTCATTTGCAAGAACGAGTTCGTCGATTTGTTCAATATAAATGGATTGCAACTCGAGGTGTAGATGAAGAGTCGATCTTGCGCTCGTTACCTTTGGATCTTCGTCGTCAAATTCAAAGACATCTTTCTCTTGCACTCGTTCGCCGTGTACCCTTTTTTGCACAAATGGATGCACAGCTATTGGACGCCATTTGCGAGCGTCTCGTCTCGTCCTTGAATACCAAAGACACATTCTTAACCAGAGAGGGAGATCCCGTAAATGAGATGCTCTTCATCATCAGAGGTCAACTAGAGAGCTCCACCACCAATGGTGGCAGGTCAGGATTCTTCAACTCCATCACTCTAAGACCCGGCGACTTCTGCGGTGAAGAACTACTAACATGGGCCCTAGTCCCAACCCCTAGCTTAAACTTCCCTTCCTCAACCCGAACCGTGAAATCACTAACCGAAGTCGAGGCATTCGCACTTCGAGCCGAAGATCTAAAGTTTGTAGCCAGTCAGTTCAAGAGGCTCCATAGCAAGAAACTCCAACATGCTTTTAGATATTACTCCCATCAATGGAGGACTTGGGGATCTTGTTTCATACAAGCTGCTTGGAGAAGATATGTGAAAAGAAAGTTAGCTATGGAATTGGCAAGACAAGAAGAGCTTTATTACACAAACATTTTGGACCAAGATCATCATAGCAGCCATGGCAATGAAATGATGGTGGGAAGTGAAGGAGTTGGTGAAACCAGTAGTACTCATGGGTCGTCTAAAACTACGATTACTACAAATAACAAAAAACAAAATCTTGGAATAACAATGTTGGCTTCAAAATTTGCAGCAAATACAAGAAGAGGAGTTCATCAAAAGTTGGCTGCACTTGGTCCTGATGCTGCTAGCTTGAAAATGCCTAAGCTGTTTAAGCCTGATGAACCTGACTTCTCTGCTTTCCAAGATGATAATTGA 2109 42.29 MHNIAYSRLGGLQKSLTLYRKVPWWDKILEPDSEFVVRWNLIFLVTCLFALFIDPLYFYLIIIGGPGCMRFNTRLGIVITFFRTIVDFFSLFHISMKFRTAFVAPNSRVFGRGDLVMDPSAIAMRYLKKDFLIDLAATLPLPQIVIWFVLPALKNPSASHANHTLALIVLIQYAPRLFVIFPLNRQINKTTGAIAKTAWAGAAYNLLLYLLASHVIGAAWYVASIQRQDECWKLECRKEMNKTHSPSCKPIFLDCESLDKPERKAWLRSTHVLTNCDAFNDEKNFEFGMFADAFTDEVASAVFYEKYFYCLWFGLKSLSAYGQNLTTSTYSGEILFSIVICSMGLVLFSHLIGQVQSYLQSTTARLEQWRVKRRDTEEWMTHRQLPLHLQERVRRFVQYKWIATRGVDEESILRSLPLDLRRQIQRHLSLALVRRVPFFAQMDAQLLDAICERLVSSLNTKDTFLTREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALVPTPSLNFPSSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYVKRKLAMELARQEELYYTNILDQDHHSSHGNEMMVGSEGVGETSSTHGSSKTTITTNNKKQNLGITMLASKFAANTRRGVHQKLAALGPDAASLKMPKLFKPDEPDFSAFQDDN* 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1043898 1047591 - CsaV3_1G001610.1 Csa01g00161 514658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00161 702 MobiDBLite consensus disorder prediction 626 644 - -
Csa01g00161 702 Gene3D - 41 362 - -
Csa01g00161 702 Pfam Ion transport protein 39 365 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Csa01g00161 702 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 698 - -
Csa01g00161 702 SUPERFAMILY cAMP-binding domain-like 367 563 IPR018490 -
Csa01g00161 702 ProSiteProfiles cAMP/cGMP binding motif profile. 438 568 IPR000595 -
Csa01g00161 702 MobiDBLite consensus disorder prediction 625 644 - -
Csa01g00161 702 SUPERFAMILY Voltage-gated potassium channels 31 360 - -
Csa01g00161 702 Gene3D Jelly Rolls 436 556 IPR014710 -
Csa01g00161 702 CDD CAP_ED 438 569 IPR000595 -
Csa01g00161 702 SMART cnmp_10 438 569 IPR000595 -
Csa01g00161 702 Pfam Cyclic nucleotide-binding domain 461 549 IPR000595 -
Csa01g00161 702 Gene3D Helix hairpin bin 364 428 - -
Csa01g00161 702 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 1 698 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00161 Csa-Chr1:1043898 Csa01g01942 Csa-Chr1:16308637 0 dispersed
Csa01g00161 Csa-Chr1:1043898 Csa03g03918 Csa-Chr3:34344343 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00161 K05391 - csv:101209760 1393.25