Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00162 ATGGCCATGGATGCCAATGGGGTTCTTTCTTTTTCAGATGATCTGGTGTTTAAGCAGAAGAAAGATGAGGTTTTGATCAACAATAATGGATGCTCTGATCATGTGCAAGTTTCTGAAGTTATGGAAGACAAAAAAGATAAAGAAGAAGAAGAAGAAGATAACTCCATTATAATCAATGGTGATGATCCTCTCAATTATCCAACCATTCCTGGTTGGTTTTCTGAGCACTGCCCGCAATGGCCAGGTCAAGCACACTTCTTAAAGGTGGATAAAGTTTTGTTTCAAGGAAACTCTGCCTATCAATCCATGTTGGTCTTTCAGACATCAGCATATGGAAAGGTATTTGTGTTGGATGGAGCACTCCAACTCACTGAGAAAGATGAATGTGCTTACCAAGAAATGATTACCCACCTTCCTCTTTGCTCTATCCCAAACCCTAAAAAGGTATTGGTGATTGGGGGAGGAGATGGTGGCATTCTAAGAGAGATTTCGAGGCATTCTTCCATTGAACATATTGACATTTGTGAAATAGACACCATGCTCATTGATGTATACAAGAAGTACTTTCCCGAAATTGCAGTTGGATACAAAGATTATCGAGTGAATCTTCATATAATTGATGGAAATGTTTTTCTGAGTTCTGTTCCACCAGGAAGCTACGATGCAATCATAGTCGACGCTTTCGATCCAATAAAGCCCGATGATGAGGTGATGAGAAGTAAGTTGTTTGAGAAGGTAGCAAAAGCACTTAAAGAAGGAGGAGTACTTTGTATTCAAGCAGAAAGTCTTTGGTTTCACTCTCTTGACATTCAAATTTTGATCTCCAAATGCAAACAAGTTTTCAAAGGCTCGGTTCAATATGCTTGGACCATTGTTCCGGCTTACCCTAGTGGAGTAATTGGTTTCTTGTTGTGTTCGACTCAAGGGCCAAAAGACGTTGACTTCAAAAATCCGATCAATCCCATTGACTCAAACACGAACTTTGGAGTTGCAACCCAACCATTGAAGTTTTACAACTCAGAGGTGCATTCAGCAGCATTTTGTTTGCCATCATTTGCAAAGAAAGCGAAAGGATTAAGAAGCAATAACTAA 1092 39.65 MAMDANGVLSFSDDLVFKQKKDEVLINNNGCSDHVQVSEVMEDKKDKEEEEEDNSIIINGDDPLNYPTIPGWFSEHCPQWPGQAHFLKVDKVLFQGNSAYQSMLVFQTSAYGKVFVLDGALQLTEKDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGILREISRHSSIEHIDICEIDTMLIDVYKKYFPEIAVGYKDYRVNLHIIDGNVFLSSVPPGSYDAIIVDAFDPIKPDDEVMRSKLFEKVAKALKEGGVLCIQAESLWFHSLDIQILISKCKQVFKGSVQYAWTIVPAYPSGVIGFLLCSTQGPKDVDFKNPINPIDSNTNFGVATQPLKFYNSEVHSAAFCLPSFAKKAKGLRSNN* 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1051117 1055704 + CsaV3_1G001620.1 Csa01g00162 514659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00162 363 CDD AdoMet_MTases 148 259 - -
Csa01g00162 363 Pfam Spermine/spermidine synthase domain 128 316 - -
Csa01g00162 363 Hamap Polyamine aminopropyltransferase [speE]. 71 358 IPR001045 GO:0003824
Csa01g00162 363 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 149 162 IPR030373 -
Csa01g00162 363 Pfam Spermidine synthase tetramerisation domain 71 125 IPR035246 -
Csa01g00162 363 Gene3D Vaccinia Virus protein VP39 125 359 IPR029063 -
Csa01g00162 363 Gene3D Spermidine synthase, tetramerisation domain 62 124 IPR037163 -
Csa01g00162 363 PANTHER SPERMIDINE/SPERMINE SYNTHASE 57 357 IPR001045 GO:0003824
Csa01g00162 363 PANTHER SPERMIDINE SYNTHASE 57 357 - -
Csa01g00162 363 MobiDBLite consensus disorder prediction 41 61 - -
Csa01g00162 363 TIGRFAM speE: spermidine synthase 72 352 IPR001045 GO:0003824
Csa01g00162 363 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 70 307 IPR030374 -
Csa01g00162 363 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 70 356 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00162 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - csv:101210007 710.294
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00837 Csa01g00162 CCT
Csa01g00837 Csa01g00162 ECH
Csa01g00162 Csa01g00837 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00162 Csa-Chr1:1051117 Csa05g00058 Csa-Chr5:286728 1.14E-120 dispersed
Csa01g00162 Csa-Chr1:1051117 Csa01g00836 Csa-Chr1:5250476 5.67E-18 wgd
Csa01g00162 Csa-Chr1:1051117 Csa05g02348 Csa-Chr5:25799234 1.97E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g719 . . Bda06g00587 . Bpe12g00587 . . . Cmo13g00925 . Cma10g00133 . Car10g00126 . . Cpe20g00230 . Bhi02g00426 . . . . . . Cla06g01652 Cam06g1836 Cec06g1887 Cco06g1892 Clacu06g1796 Cmu06g1738 Cre06g2556 Cone2ag0896 . . . Lsi02g00359 Csa01g00837 Chy12g01282 Cme12g01707 Blo13g00052 Blo15g00274 . . Bpe07g00828 . . Bma08g00171 Sed08g2494 Cmo10g00140 . Cma13g00898 . Car13g00738 . . Cpe18g00837 Bhi08g01589 Tan05g2027 Cmetu12g1070 Lac10g0432 Hepe07g2240 . . Cla01g01286 Cam01g1442 Cec01g1480 Cco01g1447 Clacu01g1353 Cmu01g1257 Cre01g1279 Lsi06g01542 Csa01g00162 Chy02g02568 Cme02g01957
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00162 Csa_Chr01 FPKM 12.505208 14.856891 4.347802 5.707881 6.715318 6.638803 7.363083 4.063706 3.853137 3.051771