Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00164 ATGCTGTCAAGTTCTTGCTTAAGTTTGTTAGAGTTATCATCTACGGATATGTTGGATTTTCCTCCTACACCGAGAACGGTACCACGGGTGATGACTGCTTCAGGAATATTTTCGGATAAGGACAGAGATTCGGAAGTTTCCTCCTCTAAATGCCGAGGGAGAAAAATTATCGTGGCAAATTTTCTCCCTCTTCATTCTAAAAAGGATCCAGATTCTGGAAAATGGAACTTCAGTTTTGATGAGGATTCGCTTTTGCTTCAGCTGAAGGATGGATTCTCACCTGATGTAGATGTTATATATGTTGGATCGTTAAAGGTTGATGTTGATATCCGAGAGCAAGATGAGGTTTCTCAGAAATTGCTGGAGGAATTCAACTGTGCACCGACTTTCATTCCTACATACCTTCAGAAACAATTCTATCATGGATTCTGCAAGCAACATTTGTGGCCACTTTTTCACTACATGATGCCAATTTCCCCTTATCATGGATCTCGCTTTGATCGACATCTTTGGCAAGCATACCTTTCAGCCAACAAAAGGTTTGCAGATAAAGTGATGGAGGTAATCAATTTAGAAGAAGATTATGTCTGGATTCACGATTACCACCTTATGGTTCTCCCTACTTTTTTGAGAAAACGCTATAGTCGAATTAAGCTTGGATTCTTCCTTCATAGTCTGTTTCCCTCATCAGAAATCTATCGAACTCTCCCTGTTAGAGACGAGATTCTGAGAGCATTACTTAATGCAGACCTAATCGGTTTCCATACATTCGATTATGCTCGCCACTTTCTATCTTGTTGTAGTAGACTACTTGGTTTAGAGTATGAATCTAAACGTGGATATCTCACGCTTGAGTATTTTGGCCGTACAATATACATCAAGATTTTACCTGTTGGAGTTCATATGGGTCGACTTGAATCTGCATTAAATCAACCACACACTTCAATCAAAGTCAAGGAAATCAAAGAAAATCTCAAAGGAAAAAAACTTATTCTTGGTGTTGATGACATAGACATATTTAAAGGTATTGGTCTGAAGCTATTGGCTATGGAACAGCTCTTGAACCAGCATCCAGAATTAAGGGGCAATATTGTTCTTGTGCAAATTCTAAATCCGGCACGGAGTAATGGGAATGACGTCCAGGAAGCAAAACGGGAAACTTATGAAATCACCAAAAGGATTAACAAGGTTTTCGGTTCTCCAGGATATGAACCTGTAATCTTGATTGATCAACCCATTTCTCCTCATGAGAAGATCGCATATTATGTATTAGCAGAGTGCTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCCTATGAGTACATTGTTTGTCGACAAGGAACTTCAAAAATGGATGAAGTCTTGGAAGTCTCCCCGGATTCACCTCGTACCAGCACAATTGTGGTATCGGAATTTATAGGTTGTTCACCATCTCTAAGTGGTGCTGTCAGGGTAAATCCCTGGGATTTTGATGCTGTAGCTGATGCACTTTATGCAGCTGTCTCCATGCCTGCTTTAGAGAAGCAACTGAGGCACGAAAAGCATTACCGATACGTTAGCTCTCACGATGTTGCTTACTGGGCTCGCAGCTTCTCACAAGATTTGGAGCGAGCATGCCGAGAACATTACAGTAAACGTTGCTGGGGCATTGGTTTTGGTTTAGGGTTTAGAATCTTGTCACTTTCTCCAAGTTTCAGGAAGCTTTCTATTGAACACATTGGCTCTGCTTATAGGAGTGCCTCTAGGAGGGCAATATTTTTGGATTATGATGGGACTGTGGTTTCTGAAACTTCGTTGATTAAGTCTCCATCACCTGAAGTTATTTCTATCATCAACAACCTTTGCATGGATTCAAAGAACACCGTTTTCATTGTTAGTGGCAGGGGGAAAGATTCTCTTGGTGCATGGTTCGCTTCTTGTAAGAATCTAGGTATTGCTGCCGAACATGGATTCTACTTGAGGTGGAAGAGGGACTCTGATTGGGAAGTTAGTCCATTAGCTGAAAACTTCGATTGGAAAAGGATTGCAGAACCTGTGATGAAACTATACACTGAGGCAACAGATGGCTCATACATAGAGACCAAAGACAGCGCATTGGTATGGCACCATCAAGATGCTGACCCTTATTTCGGTTCATGTCAGGCCATGGAGCTTTTGGACCACCTTGAAAATGTCCTTGCCAATGAACCCGTTGTTGTTAAAAGAGGTCAGCAGATCGTTGAAGTTAAACCTCAGGGTGTGACTAAAGGACTAGTTGCTGAAAGAGTTCTTTCCACAATGATAAATTCTAATAAAGCACCTGACTTTGTGCTGTGCATTGGAGATGATCGATCAGACGAAGACATGTTCGAGAGCATATCGAGCAAAAGCTATAGCTCATCACTTGCTGGCCCCCCAAAGATATTTGCCTGTACTGTGGGGCAAAAGCCTAGCAAAGCCAAATACTATTTAGATGATACCACCGATGTTTTGACCCTGCTTCAAAGCCTGGCCACCCCTTCTACCCGTAAACTGAGGCCGAGTTTTGAAACTCGTGTTTTGTTTGAGGATGATATTTGA 2568 41.59 MLSSSCLSLLELSSTDMLDFPPTPRTVPRVMTASGIFSDKDRDSEVSSSKCRGRKIIVANFLPLHSKKDPDSGKWNFSFDEDSLLLQLKDGFSPDVDVIYVGSLKVDVDIREQDEVSQKLLEEFNCAPTFIPTYLQKQFYHGFCKQHLWPLFHYMMPISPYHGSRFDRHLWQAYLSANKRFADKVMEVINLEEDYVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSLFPSSEIYRTLPVRDEILRALLNADLIGFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKILPVGVHMGRLESALNQPHTSIKVKEIKENLKGKKLILGVDDIDIFKGIGLKLLAMEQLLNQHPELRGNIVLVQILNPARSNGNDVQEAKRETYEITKRINKVFGSPGYEPVILIDQPISPHEKIAYYVLAECCIVNALRDGMNLVPYEYIVCRQGTSKMDEVLEVSPDSPRTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVADALYAAVSMPALEKQLRHEKHYRYVSSHDVAYWARSFSQDLERACREHYSKRCWGIGFGLGFRILSLSPSFRKLSIEHIGSAYRSASRRAIFLDYDGTVVSETSLIKSPSPEVISIINNLCMDSKNTVFIVSGRGKDSLGAWFASCKNLGIAAEHGFYLRWKRDSDWEVSPLAENFDWKRIAEPVMKLYTEATDGSYIETKDSALVWHHQDADPYFGSCQAMELLDHLENVLANEPVVVKRGQQIVEVKPQGVTKGLVAERVLSTMINSNKAPDFVLCIGDDRSDEDMFESISSKSYSSSLAGPPKIFACTVGQKPSKAKYYLDDTTDVLTLLQSLATPSTRKLRPSFETRVLFEDDI* 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1067140 1069916 + CsaV3_1G001640.1 Csa01g00164 514661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00164 855 TIGRFAM T6PP: trehalose-phosphatase 583 834 IPR003337 GO:0003824|GO:0005992
Csa01g00164 855 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 844 IPR001830 GO:0003824|GO:0005992
Csa01g00164 855 Gene3D Glycogen Phosphorylase B; 46 306 - -
Csa01g00164 855 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 587 788 IPR006379 -
Csa01g00164 855 Pfam Glycosyltransferase family 20 54 539 IPR001830 GO:0003824|GO:0005992
Csa01g00164 855 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 54 543 - -
Csa01g00164 855 Gene3D - 715 844 IPR023214 -
Csa01g00164 855 Gene3D - 585 702 IPR023214 -
Csa01g00164 855 Pfam Trehalose-phosphatase 589 823 IPR003337 GO:0003824|GO:0005992
Csa01g00164 855 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 844 - -
Csa01g00164 855 CDD GT20_TPS 54 539 IPR001830 GO:0003824|GO:0005992
Csa01g00164 855 Gene3D Glycogen Phosphorylase B; 307 523 - -
Csa01g00164 855 CDD HAD_TPP 587 826 - -
Csa01g00164 855 SUPERFAMILY HAD-like 586 834 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00164 Csa-Chr1:1067140 Csa03g00151 Csa-Chr3:1167633 0 dispersed
Csa01g00164 Csa-Chr1:1067140 Csa05g02351 Csa-Chr5:25831660 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00164 K16055 - csv:101209676 1698.72