Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00164 | ATGCTGTCAAGTTCTTGCTTAAGTTTGTTAGAGTTATCATCTACGGATATGTTGGATTTTCCTCCTACACCGAGAACGGTACCACGGGTGATGACTGCTTCAGGAATATTTTCGGATAAGGACAGAGATTCGGAAGTTTCCTCCTCTAAATGCCGAGGGAGAAAAATTATCGTGGCAAATTTTCTCCCTCTTCATTCTAAAAAGGATCCAGATTCTGGAAAATGGAACTTCAGTTTTGATGAGGATTCGCTTTTGCTTCAGCTGAAGGATGGATTCTCACCTGATGTAGATGTTATATATGTTGGATCGTTAAAGGTTGATGTTGATATCCGAGAGCAAGATGAGGTTTCTCAGAAATTGCTGGAGGAATTCAACTGTGCACCGACTTTCATTCCTACATACCTTCAGAAACAATTCTATCATGGATTCTGCAAGCAACATTTGTGGCCACTTTTTCACTACATGATGCCAATTTCCCCTTATCATGGATCTCGCTTTGATCGACATCTTTGGCAAGCATACCTTTCAGCCAACAAAAGGTTTGCAGATAAAGTGATGGAGGTAATCAATTTAGAAGAAGATTATGTCTGGATTCACGATTACCACCTTATGGTTCTCCCTACTTTTTTGAGAAAACGCTATAGTCGAATTAAGCTTGGATTCTTCCTTCATAGTCTGTTTCCCTCATCAGAAATCTATCGAACTCTCCCTGTTAGAGACGAGATTCTGAGAGCATTACTTAATGCAGACCTAATCGGTTTCCATACATTCGATTATGCTCGCCACTTTCTATCTTGTTGTAGTAGACTACTTGGTTTAGAGTATGAATCTAAACGTGGATATCTCACGCTTGAGTATTTTGGCCGTACAATATACATCAAGATTTTACCTGTTGGAGTTCATATGGGTCGACTTGAATCTGCATTAAATCAACCACACACTTCAATCAAAGTCAAGGAAATCAAAGAAAATCTCAAAGGAAAAAAACTTATTCTTGGTGTTGATGACATAGACATATTTAAAGGTATTGGTCTGAAGCTATTGGCTATGGAACAGCTCTTGAACCAGCATCCAGAATTAAGGGGCAATATTGTTCTTGTGCAAATTCTAAATCCGGCACGGAGTAATGGGAATGACGTCCAGGAAGCAAAACGGGAAACTTATGAAATCACCAAAAGGATTAACAAGGTTTTCGGTTCTCCAGGATATGAACCTGTAATCTTGATTGATCAACCCATTTCTCCTCATGAGAAGATCGCATATTATGTATTAGCAGAGTGCTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCCTATGAGTACATTGTTTGTCGACAAGGAACTTCAAAAATGGATGAAGTCTTGGAAGTCTCCCCGGATTCACCTCGTACCAGCACAATTGTGGTATCGGAATTTATAGGTTGTTCACCATCTCTAAGTGGTGCTGTCAGGGTAAATCCCTGGGATTTTGATGCTGTAGCTGATGCACTTTATGCAGCTGTCTCCATGCCTGCTTTAGAGAAGCAACTGAGGCACGAAAAGCATTACCGATACGTTAGCTCTCACGATGTTGCTTACTGGGCTCGCAGCTTCTCACAAGATTTGGAGCGAGCATGCCGAGAACATTACAGTAAACGTTGCTGGGGCATTGGTTTTGGTTTAGGGTTTAGAATCTTGTCACTTTCTCCAAGTTTCAGGAAGCTTTCTATTGAACACATTGGCTCTGCTTATAGGAGTGCCTCTAGGAGGGCAATATTTTTGGATTATGATGGGACTGTGGTTTCTGAAACTTCGTTGATTAAGTCTCCATCACCTGAAGTTATTTCTATCATCAACAACCTTTGCATGGATTCAAAGAACACCGTTTTCATTGTTAGTGGCAGGGGGAAAGATTCTCTTGGTGCATGGTTCGCTTCTTGTAAGAATCTAGGTATTGCTGCCGAACATGGATTCTACTTGAGGTGGAAGAGGGACTCTGATTGGGAAGTTAGTCCATTAGCTGAAAACTTCGATTGGAAAAGGATTGCAGAACCTGTGATGAAACTATACACTGAGGCAACAGATGGCTCATACATAGAGACCAAAGACAGCGCATTGGTATGGCACCATCAAGATGCTGACCCTTATTTCGGTTCATGTCAGGCCATGGAGCTTTTGGACCACCTTGAAAATGTCCTTGCCAATGAACCCGTTGTTGTTAAAAGAGGTCAGCAGATCGTTGAAGTTAAACCTCAGGGTGTGACTAAAGGACTAGTTGCTGAAAGAGTTCTTTCCACAATGATAAATTCTAATAAAGCACCTGACTTTGTGCTGTGCATTGGAGATGATCGATCAGACGAAGACATGTTCGAGAGCATATCGAGCAAAAGCTATAGCTCATCACTTGCTGGCCCCCCAAAGATATTTGCCTGTACTGTGGGGCAAAAGCCTAGCAAAGCCAAATACTATTTAGATGATACCACCGATGTTTTGACCCTGCTTCAAAGCCTGGCCACCCCTTCTACCCGTAAACTGAGGCCGAGTTTTGAAACTCGTGTTTTGTTTGAGGATGATATTTGA | 2568 | 41.59 | MLSSSCLSLLELSSTDMLDFPPTPRTVPRVMTASGIFSDKDRDSEVSSSKCRGRKIIVANFLPLHSKKDPDSGKWNFSFDEDSLLLQLKDGFSPDVDVIYVGSLKVDVDIREQDEVSQKLLEEFNCAPTFIPTYLQKQFYHGFCKQHLWPLFHYMMPISPYHGSRFDRHLWQAYLSANKRFADKVMEVINLEEDYVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSLFPSSEIYRTLPVRDEILRALLNADLIGFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKILPVGVHMGRLESALNQPHTSIKVKEIKENLKGKKLILGVDDIDIFKGIGLKLLAMEQLLNQHPELRGNIVLVQILNPARSNGNDVQEAKRETYEITKRINKVFGSPGYEPVILIDQPISPHEKIAYYVLAECCIVNALRDGMNLVPYEYIVCRQGTSKMDEVLEVSPDSPRTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVADALYAAVSMPALEKQLRHEKHYRYVSSHDVAYWARSFSQDLERACREHYSKRCWGIGFGLGFRILSLSPSFRKLSIEHIGSAYRSASRRAIFLDYDGTVVSETSLIKSPSPEVISIINNLCMDSKNTVFIVSGRGKDSLGAWFASCKNLGIAAEHGFYLRWKRDSDWEVSPLAENFDWKRIAEPVMKLYTEATDGSYIETKDSALVWHHQDADPYFGSCQAMELLDHLENVLANEPVVVKRGQQIVEVKPQGVTKGLVAERVLSTMINSNKAPDFVLCIGDDRSDEDMFESISSKSYSSSLAGPPKIFACTVGQKPSKAKYYLDDTTDVLTLLQSLATPSTRKLRPSFETRVLFEDDI* | 856 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1067140 | 1069916 | + | CsaV3_1G001640.1 | Csa01g00164 | 514661 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00164 | 855 | TIGRFAM | T6PP: trehalose-phosphatase | 583 | 834 | IPR003337 | GO:0003824|GO:0005992 | |
Csa01g00164 | 855 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 1 | 844 | IPR001830 | GO:0003824|GO:0005992 | |
Csa01g00164 | 855 | Gene3D | Glycogen Phosphorylase B; | 46 | 306 | - | - | |
Csa01g00164 | 855 | TIGRFAM | HAD-SF-IIB: HAD hydrolase, family IIB | 587 | 788 | IPR006379 | - | |
Csa01g00164 | 855 | Pfam | Glycosyltransferase family 20 | 54 | 539 | IPR001830 | GO:0003824|GO:0005992 | |
Csa01g00164 | 855 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 54 | 543 | - | - | |
Csa01g00164 | 855 | Gene3D | - | 715 | 844 | IPR023214 | - | |
Csa01g00164 | 855 | Gene3D | - | 585 | 702 | IPR023214 | - | |
Csa01g00164 | 855 | Pfam | Trehalose-phosphatase | 589 | 823 | IPR003337 | GO:0003824|GO:0005992 | |
Csa01g00164 | 855 | PANTHER | ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED | 1 | 844 | - | - | |
Csa01g00164 | 855 | CDD | GT20_TPS | 54 | 539 | IPR001830 | GO:0003824|GO:0005992 | |
Csa01g00164 | 855 | Gene3D | Glycogen Phosphorylase B; | 307 | 523 | - | - | |
Csa01g00164 | 855 | CDD | HAD_TPP | 587 | 826 | - | - | |
Csa01g00164 | 855 | SUPERFAMILY | HAD-like | 586 | 834 | IPR036412 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00164 | Csa-Chr1:1067140 | Csa03g00151 | Csa-Chr3:1167633 | 0 | dispersed | |
Csa01g00164 | Csa-Chr1:1067140 | Csa05g02351 | Csa-Chr5:25831660 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00164 | K16055 | - | csv:101209676 | 1698.72 |