Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00169 ATGGCTTCCAGTGCTTCAAGGTTCATCAAGTGCGTTACGGTTGGAGATGGAGCTGTTGGGAAGACCTGCATGCTCATATGTTATACCAGTAATAAATTCCCCACTGATTATATACCCACTGTGTTTGATAACTTCAGTGCAAATGTTGTGGTTGAAGGCACCACGGTCAATTTAGGCCTGTGGGATACCGCAGGTCAAGAAGATTACAATAGATTAAGGCCATTAAGCTACAGAGGAGCTGATGTTTTCATCCTTGCTTTTTCGTTAGTTAGCCGAGCGAGTTACGAAAACGTACTTAAGAAGTGGATTCCGGAGCTTCAACATTATGCACCTGGAGTCCCGGTGGTGTTGGTTGGCACCAAATTGGATCTTCGAGAGGACAAATTCTATTTGGCTGATCATCCTGGATTGGTGCCCGTAACCACTTTGCAGGGTGAGGAACTCCGTAAACAGATAGGTGCGACATATTACGTCGAATGCAGCTCAAAAACCCAGCAGAATGTGAAATCAGTTTTTGATGCAGCAATCAAGGTGGTTATCAAGCCACCACAGAAACAAAAAGAGAAGAAACGGCCACACCGTGGGTGTCTCTTAAATGTGTTCTGTGGAAGAAACCTTACGAGGCAAAGTTGA 633 44.87 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLVSRASYENVLKKWIPELQHYAPGVPVVLVGTKLDLREDKFYLADHPGLVPVTTLQGEELRKQIGATYYVECSSKTQQNVKSVFDAAIKVVIKPPQKQKEKKRPHRGCLLNVFCGRNLTRQS* 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1089661 1105409 + CsaV3_1G001690.1 Csa01g00169 514666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00169 210 PRINTS Transforming protein P21 ras signature 9 30 - -
Csa01g00169 210 PRINTS Transforming protein P21 ras signature 32 48 - -
Csa01g00169 210 PRINTS Transforming protein P21 ras signature 49 71 - -
Csa01g00169 210 PRINTS Transforming protein P21 ras signature 111 124 - -
Csa01g00169 210 PRINTS Transforming protein P21 ras signature 157 179 - -
Csa01g00169 210 SMART rab_sub_5 9 182 - -
Csa01g00169 210 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Csa01g00169 210 PANTHER RHO FAMILY GTPASE 1 203 IPR003578 GO:0005525|GO:0007264
Csa01g00169 210 SMART ras_sub_4 6 182 - -
Csa01g00169 210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Csa01g00169 210 ProSiteProfiles small GTPase Rab1 family profile. 4 210 - -
Csa01g00169 210 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
Csa01g00169 210 CDD Rop_like 8 180 - -
Csa01g00169 210 Gene3D - 2 199 IPR027417 -
Csa01g00169 210 PANTHER GTPASE, PUTATIVE-RELATED 1 203 - -
Csa01g00169 210 TIGRFAM small_GTP: small GTP-binding protein domain 9 173 IPR005225 GO:0005525
Csa01g00169 210 Pfam Ras family 10 179 IPR001806 GO:0003924|GO:0005525
Csa01g00169 210 ProSiteProfiles small GTPase Ras family profile. 4 198 IPR001806 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00169 K04392 RAC1; Ras-related C3 botulinum toxin substrate 1 - csv:101210663 409.453
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00169 Csa-Chr1:1089661 Csa02g01707 Csa-Chr2:16841629 2.84E-117 dispersed
Csa01g00169 Csa-Chr1:1089661 Csa06g03669 Csa-Chr6:29490536 1.42E-117 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g705 Blo04g00876 . . . . . . . . . Cma10g00140 Cma11g00107 Car10g00131 Car11g00106 Sed08g0145 . Cpe04g01544 Bhi02g00417 Tan09g2221 Cmetu02g0238 . Hepe09g0185 . . Cla06g01646 Cam06g1831 Cec06g1880 Cco06g1886 Clacu06g1790 Cmu06g1732 Cre06g2550 Cone2ag0888 Cone16ag0122 Cone13ag0128 Cone19ag0132 . . . . Blo13g00048 . . . . Bpe15g00483 . Bma08g00175 . Cmo10g00146 Cmo11g00109 . . . . . Cpe18g00834 . . . . . . . . . . . . . . Lsi06g01534 Csa01g00169 Chy02g02562 Cme02g01951
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00169 Csa_Chr01 FPKM 1.979671 2.229613 1.591181 1.831177 1.269115 0.84344 2.341377 0.434605 0.517577 0.514091