Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00170 ATGCATGGGCGTCGAGGTGAGGACTGGAAACGGATTCGGCACATGTGGACAGTCCCCACACCTGCTACTCAGATCCTAGAAGCAGATGGTTCTTCGTCATCGTCTTCGTCTGCACCTAATTCCTTTTGCAAGGGTGGACGTAGGATTAGTGTTGGTGATTGTGCTCTTTTCAAACCCCCCCAAGATTCCCCTCCTTTTATTGGCATAATCCGGTGGTTGTCGGCTGGTAAGGAGAATAAGTTGAAGTTAGGTGTAAATTGGCTTTATCGATCTTCTGAACTAAGGCTCGGCAAAGGCATCCTTTTGGAAGCTGCGCCGAACGAAGTCTTCTATTCCTTTCATAAGGATGAAATTCCTGCTGCATCTTTACTCCATCCGTGTAAAGTTGCATTCCTTCCAAAGGACGTTGAACTTCCATCAGGGATTTCGTCGTTTGTGTGTCGAAGAGTGTATGACATAACAAATAAGTGTTTATGGTGGCTAACTGATCAGGATTATATTCATGAACGTCAAGAAGAAGTAGATCAATTGTTATACAAGACAAGATTAGAAATGCATGCTTCAGTGCAACCCGGTGGCCGATCACCTAAGCCCACAAGTGGTCCTACATCGACATCTCAGTTAAAAGCTAATTCAGATAGTGTTCAAACCACTGCCTTTCCTTCTCACACAAAAGGCAAGAAAAGAGAAAGGAGTGACCAAGGATTAGAATCTGTCAAACGAGAACGTATCATCAAAGCTGATGAAGGGGATTCTGCTAACTGCAGATTGGAAAATATTTTGAAGTCAGAGATTGCAAAATTTGCTGAAAAAGGAGGCCTAGTTGATTCTGAAGCCGTCGAGAAATTGGTGCAGCTTATGCTGACGGATAGAAATGACAAAAAAATTGATTTGGCTGGCAGATCAGCACTTGCAGGTGTTATAGCTGCTACAGATAAGGTTGAGTGCCTTAGTCAGTTTGTGCACCTTAAGGGTTTACCTGTACTTGATGAATGGCTTCAAGAGGTTCACAAGGGAAAAATTGGCAGTGGTGGTAGCCCCAAGGATAGCGACAAATCAGTTGAGGAATTTCTCCTGGTTTTGCTTCGTGCCCTTGATAAACTGCCTGTAAATCTTCCTGCTTTACAAATGTGCAACATTGGAAAGTCTGTGAATCATTTACGCTCGCATAAGAATTTGGAAATTCAGAAGAAAGCAAGGAGCTTAGTGGACACATGGAAAAAACGTGTTGAAGCTGAAATGAACATTAATGATGCGAAGTCTGGTTCAAACCAAGCTGTTGCATGGAGTGCAAGAACTCGTCCATCTGATGTTTCTCATGGAGGGAGAAATCAGGATGCATCCTCTGAAGTGGCCATGAAGAGCTCGGTTTCTCAGTTTTCTACGTCCAAATCTGCTTCAGTTAAGCTTGCCCAGGATGATAGTGTTACAAGATCTGCATCTGCCTCTCCTGGTTCTATGAAACCAGTTTTATCACCTGCAACAGCAAGCATTAACTCGAAAGATGGTTCTTCCAGAAATCCGGGTGTTTGTGGCACAACCGATCATGTTCAAACTATTGCCAGGGATGAAAAGAGTAGCAGTTCCAGTCAGTCACACAACAATAGTCAATCATGTTCTAGCGAACATGGTAAAAGTGGTGGTTTAGGGAAAGAGGATGCAAGAAGCTCTACTGCTGGTTCAATGAGTGTGAATAAGATCTCGGGTGGTGGATCTCGCCAGCGCAAGTCAGTTAATGGATTTCCTGGTCCTGTTCTCTCAGGGGGTCAACGTGATGTAGGGTCGGGTAAAAGTTCTTTGCATAGAAACACAGTTTTGGAGAGATCATCACAATCTGGAATGACCTTTGAAAAGGCATCTGATGGCCTTATTGGTGAGGGGAACAGTCCTAAATTGATAGTGAAGATCACCAATCGTGGCCGGAGTCCTGCACAGAGTGCTAGTGGAGGATCTTTTGAAGATCCTTCAACAATAAATAGCAGGGCGTCTTCTCCTCCACTTTCAGAGAAACATGATCAACTTGATCACAGTAAGAGCGATACTTGTCAACCTAATATTACTGGAGATGTGAATGCAGAGCCCTGGCAGAATAGTGATGTAAAGGATATGGTGATTGGCGCTGATGGTGACGATGGATCTCCTACTGCTGTAAATGGTGAAGAGCGCTGTCGAGCTGCAGAAGATGTAACAGTTTCAAAGGCTACTCCATTATCATTGGCGAATGATCATAAGAATGGAAAGTTACATGAGGCTTCTTTCAGCTCCATAAATGCTTTAATTGAGAGCTGCATTAAATGCTCTGAACCTAGTATGCCTACCTCACTCACGGATAATGTTGGAATGAACTTACTCGCAAGTGTAGCAGCAGTTGAAATGTCGAAGTCTGATTTTGTTTTGCCGTCCGATACACAAGGAAATCTCACTGCAACGGACCGTTCTTCTAGAGGTAGTGATTGTAAGATCAAGGCATCTTGTCCTGAAGAGGATGCTAGAGATATAGATGGTACCGAGCAGGGTGTAATCACCAGTTCCTTGGGAGGTAAAAATGTGGAAGGAAGGTCTGGTTCACAATCTGAAGAGAAAGTTGTTGGAGATCTGAATGGTCATTTAAAATCTCCTGGTGTAAACTTGCAGCAAACTGCTGCGCCGTTGGCAGATGGGTGTATGAAAATAAACGACCCTGGAGGTCCTGCCTCTCCTGCTAGGGTACCAGAGAAGGGCTTTGAGAGCAAGGGGGTTAAACCAGTTAAGGGCAGAAAGACAGCTGATGTAGTTGATGGAGATAGCAGCCCAGAATCAAAACCAAAACCGAGCAGTTCTTTTCCTGATGGTGGCATGGTTGGTGATGGTATCTCGAATCGGGAAGTTGAAATGGATGTTCTCGATGAGTCTTTGCATCGGCGGCAAGAAGTTGAGGGCAATACAAATAATAGACTGAATGGTATTAATACAGCAGATCAAAGGTTATCTTCCAAGTTGAACAGTGATTCTGCTAAATTAAGGAATGACGGACTACTTCAGGCTTCAGGCTCTTCAAGTGATCTGGTTTCTGTAAATGCAAGTGGGATGAAGGGCGAGAAGGATGATGAAACCACAGCTGATGTCAAACTTGAAAAACATCAAAGTGATTTAGATTCCATGCCTTCTGAGTCCCGAGGTTTAGGTGTCTTGTGTTCAGCTACCAACCATGAGGATGAGCATGTGGAGGAGAATTTGGAGCCTAAAGAGAACACAGAGAGAAGTGGAGGGCAGACACATCATGGGCAGTCTATTATTTCTCCTGTTCACGAAACGGAGCACCCTAAGCCATCCAAGAGATCCAAATTAGCTGGTGTTGAATCAGAAGAGGCAGAGGAGTCTACATCCACTGCTGCAGATGCTGGTTCCATGTCTGCTGTGGGGGTGTCAGATATGGATGCTAAGTTGGAATTTGATTTGAATGAAGGCTTTAATGTAGATGATGGAAAATGCAGTGAGCCAAGCAGCTTCACACCGTCTGGTTGTTTAACAACTGTTCAGTTAATTAGTCCGTTGCCCCTTACAGTATCTAATGTGGCGAACAACCTTCCTGCTTCAATTACAGTTGCAGCTGCGGCGAAAGGAGGTTTCGTACCACCTGATGATCTATTGAGGAGCAAAGGGGAACTTGGTTGGAAAGGATCAGCAGCCACAAGTGCTTTTCGACCTGCTGAACCTAGAAAAGTTCTAGAAATGCCTCTAGGTCTTGCAACCACTCCACTTGCTGATGTTTCAGCCAGCAAAATTTCTCGACCCCCATTGGATATTGATTTGAACATTCCCGATGAAAGGATTCTTGAGGACATGAATGCTCAGATGTCTACTCAGGAGGTGGCTTCTAAGTCTGACCTGGGACATGGTATAGGCACCACACAAGGACGTTGTTCTGGAGGACTAGATCTTGACTTGAACCGAGTTGATGATGCTCCTGATCCAAGCAACTTCTCCTTGAACAATTGTCGTAGAATAGAGGCTCCTCTTAGTGTTAAATCATCTACTGTTCCTCTCAGTGACAAGGTGAATTTTCGTAGGGACTTTGATTTAAATGGTCCTATTGTCGATGAGGCCACTACTGAACCATCGATATTTCCTCAGCATGCCAGAAGCAGTATGCCAGCCCAGCCATCAGTTTCTGGCCTTTGGATGAACAATGCAGAAATGGGAAATTTCCCATCATGGTTTCCTCCCGGGAATGCCTATTCAGCTGTTGCAATTCCATCGATTTTGCCTGATAGAGCAGAACAGTCGTTTCCAGTTGTTGCAACAAATGGACCACCCAGGATTTTGGGACCCACAAGTGGTAGCAGTCCATATAGCCCTGATGTCTTTAGAGGGCCAGTATTATCATCTTCTCCGGCAGTGCCGTTTCCTTCTGCACCTTTTCAATATCCTGTCCTGTCTTTTGGAAATAGCTTTCCTCTATCTTCAGCCACGTTTTCAGGTAATGCAACAGCATACGTTGATTCATCATCCGCTAGCAGGCTTTGCTTCCCAGCAGTCCCTTCACAATTTTTAGGTCCTCCTGGTACAGTTTCAACCCCATATCCAAGACCTTATGTTGTCAGTCACTCAGATGGCGGCAACAATACTAGTTCTGATAGTAGTCGAAAGTGGGGAAGACAAGGTTTAGATCTAAATGCCGGTCCTGTAGTTCCAGACATTGAAGGAAGAGAGGAATCGTCATCCTTGGTACCAAGGCAACTATCTGTTGCTAGTTCGCAGGCCACAGCCGAAGAGCATATGAGGGTTTACCAGCCAGCAATTGGCATAATGAAAAGAAAGGAGCCAGAGGGAGGATGGGATGGGTACAAACAGTCATCATGGTCGTAG 4848 44.74 MHGRRGEDWKRIRHMWTVPTPATQILEADGSSSSSSSAPNSFCKGGRRISVGDCALFKPPQDSPPFIGIIRWLSAGKENKLKLGVNWLYRSSELRLGKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLPKDVELPSGISSFVCRRVYDITNKCLWWLTDQDYIHERQEEVDQLLYKTRLEMHASVQPGGRSPKPTSGPTSTSQLKANSDSVQTTAFPSHTKGKKRERSDQGLESVKRERIIKADEGDSANCRLENILKSEIAKFAEKGGLVDSEAVEKLVQLMLTDRNDKKIDLAGRSALAGVIAATDKVECLSQFVHLKGLPVLDEWLQEVHKGKIGSGGSPKDSDKSVEEFLLVLLRALDKLPVNLPALQMCNIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEAEMNINDAKSGSNQAVAWSARTRPSDVSHGGRNQDASSEVAMKSSVSQFSTSKSASVKLAQDDSVTRSASASPGSMKPVLSPATASINSKDGSSRNPGVCGTTDHVQTIARDEKSSSSSQSHNNSQSCSSEHGKSGGLGKEDARSSTAGSMSVNKISGGGSRQRKSVNGFPGPVLSGGQRDVGSGKSSLHRNTVLERSSQSGMTFEKASDGLIGEGNSPKLIVKITNRGRSPAQSASGGSFEDPSTINSRASSPPLSEKHDQLDHSKSDTCQPNITGDVNAEPWQNSDVKDMVIGADGDDGSPTAVNGEERCRAAEDVTVSKATPLSLANDHKNGKLHEASFSSINALIESCIKCSEPSMPTSLTDNVGMNLLASVAAVEMSKSDFVLPSDTQGNLTATDRSSRGSDCKIKASCPEEDARDIDGTEQGVITSSLGGKNVEGRSGSQSEEKVVGDLNGHLKSPGVNLQQTAAPLADGCMKINDPGGPASPARVPEKGFESKGVKPVKGRKTADVVDGDSSPESKPKPSSSFPDGGMVGDGISNREVEMDVLDESLHRRQEVEGNTNNRLNGINTADQRLSSKLNSDSAKLRNDGLLQASGSSSDLVSVNASGMKGEKDDETTADVKLEKHQSDLDSMPSESRGLGVLCSATNHEDEHVEENLEPKENTERSGGQTHHGQSIISPVHETEHPKPSKRSKLAGVESEEAEESTSTAADAGSMSAVGVSDMDAKLEFDLNEGFNVDDGKCSEPSSFTPSGCLTTVQLISPLPLTVSNVANNLPASITVAAAAKGGFVPPDDLLRSKGELGWKGSAATSAFRPAEPRKVLEMPLGLATTPLADVSASKISRPPLDIDLNIPDERILEDMNAQMSTQEVASKSDLGHGIGTTQGRCSGGLDLDLNRVDDAPDPSNFSLNNCRRIEAPLSVKSSTVPLSDKVNFRRDFDLNGPIVDEATTEPSIFPQHARSSMPAQPSVSGLWMNNAEMGNFPSWFPPGNAYSAVAIPSILPDRAEQSFPVVATNGPPRILGPTSGSSPYSPDVFRGPVLSSSPAVPFPSAPFQYPVLSFGNSFPLSSATFSGNATAYVDSSSASRLCFPAVPSQFLGPPGTVSTPYPRPYVVSHSDGGNNTSSDSSRKWGRQGLDLNAGPVVPDIEGREESSSLVPRQLSVASSQATAEEHMRVYQPAIGIMKRKEPEGGWDGYKQSSWS* 1616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1094424 1100351 - CsaV3_1G001700.1 Csa01g00170 514667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00170 1615 MobiDBLite consensus disorder prediction 556 575 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 800 860 - -
Csa01g00170 1615 ProSiteProfiles TFIIS N-terminal domain profile. 327 413 IPR017923 -
Csa01g00170 1615 Gene3D - 34 258 IPR043151 -
Csa01g00170 1615 SMART BAH_4 47 162 IPR001025 GO:0003682
Csa01g00170 1615 SMART TFS2_5 333 412 IPR003617 GO:0005634
Csa01g00170 1615 Pfam TFIIS helical bundle-like domain 361 410 IPR017923 -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 592 617 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 1529 1545 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 640 694 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 1098 1115 - -
Csa01g00170 1615 CDD TFIIS_I 335 411 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 837 853 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 1064 1131 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 1005 1033 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 815 835 - -
Csa01g00170 1615 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 315 424 IPR035441 -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 188 240 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 1064 1082 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 223 240 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 907 930 - -
Csa01g00170 1615 ProSiteProfiles BAH domain profile. 47 162 IPR001025 GO:0003682
Csa01g00170 1615 MobiDBLite consensus disorder prediction 417 514 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 416 628 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 800 814 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 886 951 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 1527 1583 - -
Csa01g00170 1615 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 276 414 IPR035441 -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 1568 1583 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 679 694 - -
Csa01g00170 1615 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1614 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 640 667 - -
Csa01g00170 1615 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1614 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 193 222 - -
Csa01g00170 1615 Pfam BAH domain 49 156 IPR001025 GO:0003682
Csa01g00170 1615 MobiDBLite consensus disorder prediction 523 544 - -
Csa01g00170 1615 MobiDBLite consensus disorder prediction 1005 1019 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00170 - - - csv:101210258 3133.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00170 Csa-Chr1:1094424 Csa05g00282 Csa-Chr5:1742220 7.05E-18 dispersed
Csa06g00237 Csa-Chr6:1621766 Csa01g00170 Csa-Chr1:1094424 3.68E-06 transposed
Csa01g00170 Csa-Chr1:1094424 Csa03g03903 Csa-Chr3:34238755 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30608 PF01426 BAH 2.10E-08 No_clan Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00170 Csa_Chr01 FPKM 1.838447 1.674708 0.890864 1.015355 2.353044 2.646308 2.260942 5.686775 6.159713 5.329597