Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00175 ATGGCGTTTTTCCTCAACAAATCCACTCTTGCCTCTCATTTCCGATCTCAATCTCAGGTGGATCCTTCCTCACTTTCTCGACGTGGATTCCACGTCGAACCAGGGACTCGTGAAAAGGCTTTATTAGCTGAGGACCCTTGTCTTAGGCGGTTCAGATCACATAAGAAAGCTGTCTCTCGACTCAAAAGAGTTGGAGATGTTTTGACAATTGTGGTTGTTGCAGGATGTTGCTATGAAATCTATGTGAAAGCGACCATGCGAGAAGAAGCTCGACGACAGGCAAAGACAGGTAGCGGAAGTACATGA 306 46.41 MAFFLNKSTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVSRLKRVGDVLTIVVVAGCCYEIYVKATMREEARRQAKTGSGST* 102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1138119 1142573 - CsaV3_1G001750.1 Csa01g00175 514672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00175 101 PANTHER SUCCINATE DEHYDROGENASE SUBUNIT 7A, MITOCHONDRIAL-RELATED 1 96 IPR034573 GO:0005749
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00175 - - - csv:101212374 201.83
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g697 . . Bda06g00580 . . . . . . . . Cma11g00112 Car10g00137 Car11g00111 Sed08g0156 . Cpe04g01539 Bhi02g00403 Tan09g2209 . . Hepe09g0176 . . . . . . . . . . . Cone13ag0124 Cone19ag0127 . . . . . Blo15g00280 . . Bpe07g00821 . . . . Cmo10g00153 Cmo11g00115 . . . . . Cpe18g00828 . . . . . . . . . . . . . . Lsi06g01527 Csa01g00175 . Cme02g01944
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012824 1 1 1 0 1 1 2 1 0 0 0 1 0 1 0 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00175 Csa_Chr01 FPKM 0.317593 0.0 0.663813 0.457378 0.0 0.0 0.0 1.982543 1.522585 1.839624