Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00177 ATGTGGGTCTTTTTAGTTCATTGCAATCTTCGCCAATTCCATCGCATCGTCTTGTGTCTGTATGTCTTGTGGCCTCCTATGTTGTCGCAGAAAAGAAACCCAGATGATGGAGATGGTCCGGCGGATGGTGATAATCCCGATGATAAGCGTAGAAAGTTTTGTTTTATGAGTGTGGTTCGTGATGCCATATCATTGCAATCAATGCAACAGCTATTGGAGCCTGTCATTCGTAAAGTGGTGAGGGAGGAGGTTGAATTGGCACTAGGAAAGTACATTACCAATGTGCAAAGGAATGATGGGAATGACGCGAAAGAAAACTATTCTTCTGGGCCGAGATGCTTTCAATTGAAGTTCATAACTGATATTTTTCTCCCGGTATTTACTGGATCTCGCATTGAAGGAAGAGAGAGTTCCAATTTGATGGTGGCTTTGGTTGACACCTTAACTGGGGAAGTTGTTGGCGCTGGGCCTCAATCCTCTGCCAAGGTGGAAATTGTAGTGCTTGAGGGTGATTTTGAGGGTGGAGGTGATAATTACACCGCAGAGGAGTTTAGGAATAACATTGTAAGAGAGAGGGAAGGAAAGAAACCCCTTCTAACAGGAGAGACACTTGTGAGTCTCAAAGATGGGATTGGTTCGGTAGGTGAGATTTCTTTCACTGACAATTCAAGCTGGACTAGAAGTCGTCGGTTCAGGCTCGGTGCAAGAATTATAGACGACAATGATGGAACAAGAATTCTTGAAGCAAAGACTGCGTCATTTGTTGTCAGAGATCACCGTGGAGAATTGTACAAGAAGCACCATCCTCCAACTCTGCAGGATGAAGTATGGAGATTGCAGAAAATTAGCAAGGATGGAGCCTATCATAAGCGCCTGAGCCAAGAAAAAATCGAGACGGTGAAAGATTTCCTAACTCAGCTTTATGTACAACCTTCAAGGCTTCGCAATATTCTTGGCCATGGTATGTCTACCAAAATGTGGGAAGCTATAATTGAGCATGCACAAACATGTGTGCTCGATAAGAAGATTTATGTGTACAAACCTCATGATTTGGAACAGAAAAGCGGAGTGGTTTTTGATGTTGTAGGACGAGTAATGGGGCTACTTTCAGATTACCAGTACGTTCCCATAGATAAGCTATCTGAAAGTGAAAAGGTTGATGCTCACAACTTGGTTGTCTCTGCATACAAACACTGGGACGAAGTGGATTCCATTGATGATGAAACTTTGCTTGTAGGTGGCTCTTCTCACCCACTTAGTTTTGTTTACACCCCGAGCTCACCCATGGAGGACCATTCTTATGGTAGCAAGTACTTGTCTTCTCCAAAATTTAGTGGCTTTGATTTCCCACCATCAAATGCCTATTCTTCAGACATAATTTCATCAATGGGTTCTATTGGGAATCCTAGCGGCTTGGACGATCATGCTTTGCAGAGTTTCGGTTCTATGGTTGTAAGATATGATCCGATGCCAAGTTCCCCAAATTTTGCCAACTCTTCTCTGATCTGCGATTCCGAGCCACTACACTCATCTTTCTTTGACGTGGATCATATGCAAGTTCTAGAGTCCGATGTGCAATGTAGCTCAATTTTAGAATCACGAGTGACAACAACTACTCTTCAAGGTGGCTCCTCATCGTGTGTTGCTCAAATGAGATGGGCTAAGGTATATGGTGTGCTAAAATGGTTCTTTTTGTTGAGATTGGTAATCAGGAGAAGAAACAAACTTGGCTTCAAGAGATACAAAGGTGTACAGAGTCGTGGAAAGGAAAAATTAGACTATGGTTGA 1788 42.95 MWVFLVHCNLRQFHRIVLCLYVLWPPMLSQKRNPDDGDGPADGDNPDDKRRKFCFMSVVRDAISLQSMQQLLEPVIRKVVREEVELALGKYITNVQRNDGNDAKENYSSGPRCFQLKFITDIFLPVFTGSRIEGRESSNLMVALVDTLTGEVVGAGPQSSAKVEIVVLEGDFEGGGDNYTAEEFRNNIVREREGKKPLLTGETLVSLKDGIGSVGEISFTDNSSWTRSRRFRLGARIIDDNDGTRILEAKTASFVVRDHRGELYKKHHPPTLQDEVWRLQKISKDGAYHKRLSQEKIETVKDFLTQLYVQPSRLRNILGHGMSTKMWEAIIEHAQTCVLDKKIYVYKPHDLEQKSGVVFDVVGRVMGLLSDYQYVPIDKLSESEKVDAHNLVVSAYKHWDEVDSIDDETLLVGGSSHPLSFVYTPSSPMEDHSYGSKYLSSPKFSGFDFPPSNAYSSDIISSMGSIGNPSGLDDHALQSFGSMVVRYDPMPSSPNFANSSLICDSEPLHSSFFDVDHMQVLESDVQCSSILESRVTTTTLQGGSSSCVAQMRWAKVYGVLKWFFLLRLVIRRRNKLGFKRYKGVQSRGKEKLDYG* 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1146544 1153540 - CsaV3_1G001770.1 Csa01g00177 514674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00177 595 PANTHER CALMODULIN-BINDING PROTEIN 60 A 30 572 - -
Csa01g00177 595 Pfam Calmodulin binding protein-like N-terminal domain 114 259 IPR046831 -
Csa01g00177 595 PANTHER OS02G0177800 PROTEIN 30 572 IPR012416 GO:0005516
Csa01g00177 595 Pfam Calmodulin binding protein central domain 272 337 IPR046830 -
Csa01g00177 595 Pfam Calmodulin binding protein C-terminal domain 342 403 IPR046829 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00177 Csa-Chr1:1146544 Csa01g02131 Csa-Chr1:18554661 4.34E-106 dispersed
Csa01g00177 Csa-Chr1:1146544 Csa02g00482 Csa-Chr2:3417962 8.06E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00177 - - csv:101211405 1189.48