Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00179 ATGGAAGTTCGAGGACATCACCATTTTCCGCCATTACCAATCTCCTACAACTTCTCCCATCCACAACCCCACCTCCATTTCCCACCCTTTTTCATCCCCCCCCATCTCCATCTTCCCCAATCCGTCATTGTCTTACTTCTCATTCCTTCTGATCATCAAACACTCCACAAACCTTTTCTCCACTGTTCCGGCACCGAGGAAGCAGGTTTTCCACCACCTCCTTCCTCTTCCGCCATGGCTTCCTTTCCTCCTCCCGCTTCCCTTTTCGTAATTATCCTCTTCGCCGTTCCCTTCTTAGTTGAATCCCAGCTTTCTCTTGACTATTACCAGAAAACTTGCCCCGATTTTGCTAAGATCGTCCATGAAACCGTCTCTAAGAAGCTTGCTACTAGCCCAACCGCCGCCGCCGCCACCATGCGTCTCTTGAGCAACGATTGCTTAGTGGGAGGCTGTGATGGCTCTCTTCTCATTGCCTCAAACGCCTTCAACCACGCCGAACGCGATGCGGAAATCAACCTCTCTCTTCCAGGAGACGCATTCGATGTCGTCGCTCGAACGAAGGTCACTTTAGAGCTTTCCTGCCCAGGGATCGTCTCTTGCTCCGACGTATTAGCACAAGCGACTCGCGATCTCATCGCGATTACAGGCGGACCGTCGTACAATGTTCCATTAGGGCGAGAAGATAGTTTGGTATCAAAATCATCCGAAGTAGAAGGAAACATTCCGAAGATGAATCAAACAATTGACGAGTTGATCAAACTATACACAGCGAAAGGATTCACAATTCAAGAAATGGTAGCGTTATACGGTGGAAGAACAATCGGATTCTCAAATTGCAAGGAGTTCGGAGACCGAATCTTCAAATTCAGTAAATCAACACCAACAGATCCAGAGATCCATCCGAAGTTCGCAGAGGCTTTGAAGAAGAGCTGTGAAGGATATGAGAAGAATCCAGGAATGTCAGCGTACAGCGACGTCGTAACGCCGGGGAAATTCGACAATGTGTACTTCCAGAATCTGTTGAAAGGACTGGGATTATCGGCGTCGGAACATGCGATGGTGAAGGACGCAAGGACGAGGAAATTTGTGGAGATGTACGCCGGAAACCAAGCGTTGTTCTTCAAGGATTTCAGTAGCGCCATGGAGAAGTTGAGTGTTCGTGAAGTGAAAACTGGTGGGAAAGGAGAAGTGAGGAGGAAATGCGATGTGTTCAATTCAATTCAAACTTGA 1230 48.21 MEVRGHHHFPPLPISYNFSHPQPHLHFPPFFIPPHLHLPQSVIVLLLIPSDHQTLHKPFLHCSGTEEAGFPPPPSSSAMASFPPPASLFVIILFAVPFLVESQLSLDYYQKTCPDFAKIVHETVSKKLATSPTAAAATMRLLSNDCLVGGCDGSLLIASNAFNHAERDAEINLSLPGDAFDVVARTKVTLELSCPGIVSCSDVLAQATRDLIAITGGPSYNVPLGREDSLVSKSSEVEGNIPKMNQTIDELIKLYTAKGFTIQEMVALYGGRTIGFSNCKEFGDRIFKFSKSTPTDPEIHPKFAEALKKSCEGYEKNPGMSAYSDVVTPGKFDNVYFQNLLKGLGLSASEHAMVKDARTRKFVEMYAGNQALFFKDFSSAMEKLSVREVKTGGKGEVRRKCDVFNSIQT* 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1163120 1164835 + CsaV3_1G001790.1 Csa01g00179 514676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00179 409 PANTHER - 89 409 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00179 409 Gene3D - 107 405 - -
Csa01g00179 409 Gene3D Peroxidase, domain 2 242 384 - -
Csa01g00179 409 PRINTS Haem peroxidase superfamily signature 135 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00179 409 PRINTS Haem peroxidase superfamily signature 198 215 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00179 409 PRINTS Haem peroxidase superfamily signature 216 228 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00179 409 PRINTS Haem peroxidase superfamily signature 264 279 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00179 409 PRINTS Haem peroxidase superfamily signature 325 340 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00179 409 PANTHER PEROXIDASE 41 89 409 - -
Csa01g00179 409 Pfam Peroxidase 121 368 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00179 409 PRINTS Plant peroxidase signature 113 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00179 409 PRINTS Plant peroxidase signature 137 157 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00179 409 PRINTS Plant peroxidase signature 178 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00179 409 PRINTS Plant peroxidase signature 197 207 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00179 409 PRINTS Plant peroxidase signature 216 231 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00179 409 PRINTS Plant peroxidase signature 263 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00179 409 PRINTS Plant peroxidase signature 323 338 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00179 409 PRINTS Plant peroxidase signature 339 356 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00179 409 PRINTS Plant peroxidase signature 379 392 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00179 409 CDD secretory_peroxidase 103 404 IPR033905 GO:0004601|GO:0042744
Csa01g00179 409 ProSiteProfiles Plant heme peroxidase family profile. 103 405 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00179 409 SUPERFAMILY Heme-dependent peroxidases 103 405 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00179 Csa-Chr1:1163120 Csa05g02926 Csa-Chr5:29698277 9.34E-121 dispersed
Csa01g00179 Csa-Chr1:1163120 Csa01g00826 Csa-Chr1:5207608 1.72E-151 wgd
Csa01g00179 Csa-Chr1:1163120 Csa03g03898 Csa-Chr3:34204986 1.08E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00179 K00430 - csv:101213178 780.015