Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00180 ATGGGTGGCAATGGCAAATCCCGGTGGAAGTTCCTCTTCCCCCACCGTCGTAATTCTAGGCTTCAATCCAACGATCCTCCTAAAGAGTTCCTTTGTCCTGTTTCTGGTTCGTTAATGGCAGACCCTGTTGTCGTTTCTACTGGACAGACGTTTGACCGTGTTTCTGCTCAGGTTTGTAGAAATTTAGGGTTCTCCCCTGTGTTAGATGATGGTTCTAAGCCTGATTTCACTACTGTGATTCCTAATTTAGCTATGAAGAAGACAATTCTTCATTGGTGTGAGAAGTCTGGTGCTCGGAATCTTCAGCCTCCTAATTACACCTCCGTTGAAAGCCTTGTTTCTGCATTGATGGAGAAGGAGAAGCCTCAAGGCGGGATTGGGGATTCCTCGGATAGGGATTTGTTAGAGGGGGTATCGGATTTGCCGGCAGTGGATTTCTCGCACGCTGCGACGGAGTATGGACACCGTCCTGAACGGTTTTACACCAGCTCGTCGGAGGAATCAGTCGTCGTTGGGGGAAGCCCGGGACCGTTCACGACTCGACCTGCGTGTTATTACTCATTTTCGTCTTCTTCGTCTGAAACCGTGGAAAACGAAGCGCTCGTACAAACCCTAGGCCCGAATTCATCGATTTCCGAGGATGAGAAGAATATTTTAACGAAGCTCGAGAGTTCCGATGTGTTTCAGCAAGAAGAAGGCGTTGTTTCGCTGAGAAAAATCACGAAAGCCGATGAGAATATTAGGGTTTCTCTTTGTACGCCTCGGATTCTTTCCTCTCTCCACCGGTTGATAAAGTCGAGATACCCCAAAGTACAGATCAACGCCGTCGCCTCTCTTGTAAATCTCTCCCTCGAAAAGCCGAACAAATTAAAGATCGCGCGGTCAGGATTGGTTCCAGACTTAATCGATGTGCTTAAAGGAGGTCATTCCGAAGCTCAAGAACACGCCGCCGGAGCGCTCTTCAGCCTAGCTTTAGAGGATGACAATCGGATGACGATCGGAGTTCTCGGCGCGCTACCGCCACTCCTGTACGCACTCCGATCGGAAAGCGAGCGAACTCGAGACGATTCAGCTCTGTGTCTCTACAACCTAACAATGATTCAGAGCAACCGAGTGAAGCTTGTGAAACTCGGCGCCGTAACGACTCTACTTTCCATGGTGAAATCAAGAAACTCAACGAATCGACTGCTATTAATCCTCTGTAACATGGCCGTGTGCCAGGAGGGAAGGTCCGCAATGCTAGACGCCAACGCCGTCGAGCTTTTGGTCGGAATGCTGAGGGAGAAAGAGCTGAACTCCGAATCAACCCGCGAGAACTGCGTTGCGGCATTGTACGCACTTAGCTATGGAAGCATGAGATTCAAAGGATTAGCGAAGGAAGCTGGAGCAATGGAGGTTTTGAGGGAGATTGTCGAGAGTGGAAGCGAGAGGGCGAGAGAGAAAGCAAAGAAGATACTGGAGAGAATGAGAACGAGAGGGACATACGGTGAAGACGACGACGACGACGATCCCGACGGCGAGTCGAGTTTTGAGAGAGGTGGACTCAGTTCGACTCGGTACCCAATCGGTGGTGCAAGATTTCCCAGCTCAGCCAATACGATGCCGTTTTAA 1611 49.97 MGGNGKSRWKFLFPHRRNSRLQSNDPPKEFLCPVSGSLMADPVVVSTGQTFDRVSAQVCRNLGFSPVLDDGSKPDFTTVIPNLAMKKTILHWCEKSGARNLQPPNYTSVESLVSALMEKEKPQGGIGDSSDRDLLEGVSDLPAVDFSHAATEYGHRPERFYTSSSEESVVVGGSPGPFTTRPACYYSFSSSSSETVENEALVQTLGPNSSISEDEKNILTKLESSDVFQQEEGVVSLRKITKADENIRVSLCTPRILSSLHRLIKSRYPKVQINAVASLVNLSLEKPNKLKIARSGLVPDLIDVLKGGHSEAQEHAAGALFSLALEDDNRMTIGVLGALPPLLYALRSESERTRDDSALCLYNLTMIQSNRVKLVKLGAVTTLLSMVKSRNSTNRLLLILCNMAVCQEGRSAMLDANAVELLVGMLREKELNSESTRENCVAALYALSYGSMRFKGLAKEAGAMEVLREIVESGSERAREKAKKILERMRTRGTYGEDDDDDDPDGESSFERGGLSSTRYPIGGARFPSSANTMPF* 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1168281 1170721 + CsaV3_1G001800.1 Csa01g00180 514677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00180 536 SUPERFAMILY ARM repeat 217 488 IPR016024 -
Csa01g00180 536 Pfam Armadillo/beta-catenin-like repeat 327 365 IPR000225 GO:0005515
Csa01g00180 536 Pfam U-box domain 27 95 IPR003613 GO:0004842|GO:0016567
Csa01g00180 536 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Csa01g00180 536 PANTHER U BOX DOMAIN-CONTAINING 1 525 - -
Csa01g00180 536 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 296 333 IPR000225 GO:0005515
Csa01g00180 536 SUPERFAMILY RING/U-box 16 99 - -
Csa01g00180 536 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 525 - -
Csa01g00180 536 SMART arm_5 406 449 IPR000225 GO:0005515
Csa01g00180 536 SMART arm_5 285 325 IPR000225 GO:0005515
Csa01g00180 536 SMART arm_5 326 366 IPR000225 GO:0005515
Csa01g00180 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 98 IPR013083 -
Csa01g00180 536 CDD RING-Ubox 31 67 - -
Csa01g00180 536 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Csa01g00180 536 MobiDBLite consensus disorder prediction 489 536 - -
Csa01g00180 536 Gene3D - 213 396 IPR011989 -
Csa01g00180 536 Gene3D - 397 497 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00180 Csa-Chr1:1168281 Csa05g02927 Csa-Chr5:29699696 7.02E-170 dispersed
Csa01g00180 Csa-Chr1:1168281 Csa01g00824 Csa-Chr1:5199945 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00180 - - csv:101213423 1020.76