Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00181 ATGGCGTCCTTTTTTTCTTCCACTTTCCTTATCTTCGTTACAATTTTCGCCGCGTTCTCCACTTCTCGGTCTTCGACGATCGGAGTCGAATATATTTCGCGGCTTCTTGAGATTCAGGATCGCGAGAGAGTGCCTGCGTATGTCCAAGTTGCTGCAGCTCGTGGAGTTCTTCGTCGGCTTCTTCCTTCTCATCTCCCTAGCTTTGACTTTCAGATTGTTTCTAAGGACAAATGTGGTGGAGAATCTTGCTTCGTGATCAGGAACCATCGTGCGTTCAGGAAATCCGGGGATCCTGAGATTTTAATCGCTGGGGTCACTGGAGTGGAGATTTTAGCTGGCTTGCACTGGTATCTTAAGCACTGGTGTGGTGCACACATATCTTGGGATAAAACAGGTGGCTCACAACTGTTTTCTGTACCTAAGGCAGGCCTGTTACCTCGTATTCAAACAAACGAGGTTGTGGTTCAGAGGCCTATTCCTTTGAACTACTATCAAAATGCAGTTACATCAAGCTACTCTTTTGCCTGGTGGGACTGGAAAAGGTGGGAAAAGGAAATAGACTGGATGGCTCTTCAGGGTATCAATATGCCTCTAGCATTTACTGGGCAGGAGGCTATTTGGCGAAAAGTATTTCGGAAATTTAATATAAGCAACTCAGATTTGGATGATTTCTTTGGAGGTCCTGCTTTTCTTGCATGGTCACGTATGGGAAATTTGCACAAATGGGGTGGGCCACTGCCGCAAAGTTGGTTTGATCAACAACTTATTCTGCAGAAAAAGGTTATTGGCAGAATGTTTGAGCTGGGAATGACTCCAGTTTTGCCAGCCTTTTCGGGTAATATTCCTGCTGCTTTCAAACAAATATATCCAGCAGCAAAAATAACACGCTTGGGAAATTGGTTTACTGTTCATAGTGACCCTAGATGGTGCTGCACTTACCTTCTTGACGCCATGGACCCTTTATTTGTCGAGATTGGTAAAGCATTTATTGAGCAACAACAGAAAGAATATGGAAGAACATCCCATGTATACAATTGTGATACCTTTGACGAGAACACTCCACCTGTTGATGATGTGGAATACATCTCTTCATTAGGTTCAGCTATTTTTGGAGGAATGCAGGCAGGAGATTCTAATGCTGTCTGGCTAATGCAGGGGTGGATGTTTTCATATGATCCATTCTGGAGGCCTCAACAAATGAAGGGTTGTCATTGTGCATTACTTTCACTTCTGGTTGAAATTGGTGAGATTTTTCAGGCCCTTTTACATTCTGTCCCTCTGGGAAGGCTGGTAGTTCTTGATCTGTGCATGCTACATAATTTTGCTGGAAATGTTGAGATGTATGGCATTTTAGATTCAATAGCATCTGGACCAATTGAAGCTCGTAGTAGTCCATACTCGACAATGGTCGGTGTAGGAATGTCCATGGAAGGAATTGAACAGAATCCTGTTGTCTACGATCTTATGTCTGAAATGGCTTTTCAACACAACAAAGTTGATGTCAAGAAATGGCTTCCTCAGTATTCAGTCAGGCGTTATGGTCATTTAGTCCCTTCAATACAAGATGCCTGGGATGTATTATATCACACCGTCTACAACTGCACTGACGGTGCCAATGACAAAAACAGGGATGTAATTGTGGCATTTCCTGATGTTGATCCATCGGCAATCTTAGTATTACCCGAGGGGTCCAACCGACATGGGAACTTGGACTCAAGCGTGGATCGCCTCCAGGATGCAACGTTTGATCGACCTCATCTTTGGTATCCTACTTCTGAAGTAATTAGTGCACTCAAGCTTTTCATTGCTGGTGGCGATCAACTCTCTAGTAGCAACACTTACAGGTATGACCTTGTAGATTTGACCAGGCAAGCTCTAGCCAAATACTCGAATGAACTGTTCTTTAGAATTGTCAAGGCATATCAGTTACATGATGTACAGACAATGGCCAGCTTAAGCCAAGAGTTCCTTGAACTTGTCAATGATATTGACACATTATTGGCTTGTCACGAGGGATTTCTTTTGGGACCTTGGCTACAAAGCGCCAAACAACTCGCCCGAAGTGAAGAGGAGGAAAAACAGTATGAATGGAATGCAAGAACTCAAATAACCATGTGGTTTGACAACACAGAGGAAGAAGCAAGTTTGCTTCGTGATTATGGAAACAAGTACTGGAGTGGACTCTTGGGCGATTATTACTGTCCTCGAGCTGCAATATACTTGAAGTTCTTGAAAGAAAGTTCGGAGAATGGATACAGATTTCCATTGAGTAATTGGAGGAGAGAGTGGATAAAACTAACAAATGATTGGCAAAGCAGCAGAAAGATTTACCCTGTGGAAAGCAATGGAGATGCACTTGACACATCCCACTGGCTATACAACAAGTACTTGCAAATACCTGAGAGCTCTGACCAATGA 2418 43.3 MASFFSSTFLIFVTIFAAFSTSRSSTIGVEYISRLLEIQDRERVPAYVQVAAARGVLRRLLPSHLPSFDFQIVSKDKCGGESCFVIRNHRAFRKSGDPEILIAGVTGVEILAGLHWYLKHWCGAHISWDKTGGSQLFSVPKAGLLPRIQTNEVVVQRPIPLNYYQNAVTSSYSFAWWDWKRWEKEIDWMALQGINMPLAFTGQEAIWRKVFRKFNISNSDLDDFFGGPAFLAWSRMGNLHKWGGPLPQSWFDQQLILQKKVIGRMFELGMTPVLPAFSGNIPAAFKQIYPAAKITRLGNWFTVHSDPRWCCTYLLDAMDPLFVEIGKAFIEQQQKEYGRTSHVYNCDTFDENTPPVDDVEYISSLGSAIFGGMQAGDSNAVWLMQGWMFSYDPFWRPQQMKGCHCALLSLLVEIGEIFQALLHSVPLGRLVVLDLCMLHNFAGNVEMYGILDSIASGPIEARSSPYSTMVGVGMSMEGIEQNPVVYDLMSEMAFQHNKVDVKKWLPQYSVRRYGHLVPSIQDAWDVLYHTVYNCTDGANDKNRDVIVAFPDVDPSAILVLPEGSNRHGNLDSSVDRLQDATFDRPHLWYPTSEVISALKLFIAGGDQLSSSNTYRYDLVDLTRQALAKYSNELFFRIVKAYQLHDVQTMASLSQEFLELVNDIDTLLACHEGFLLGPWLQSAKQLARSEEEEKQYEWNARTQITMWFDNTEEEASLLRDYGNKYWSGLLGDYYCPRAAIYLKFLKESSENGYRFPLSNWRREWIKLTNDWQSSRKIYPVESNGDALDTSHWLYNKYLQIPESSDQ* 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1172245 1182327 + CsaV3_1G001810.1 Csa01g00181 514678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00181 805 Gene3D - 23 152 IPR029018 -
Csa01g00181 805 Gene3D Glycosidases 158 496 - -
Csa01g00181 805 PANTHER ALPHA-N-ACETYLGLUCOSAMINIDASE 47 798 IPR007781 -
Csa01g00181 805 Pfam Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain 51 146 IPR024240 -
Csa01g00181 805 Gene3D - 498 804 - -
Csa01g00181 805 Pfam Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain 163 495 IPR024733 -
Csa01g00181 805 Pfam Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain 504 795 IPR024732 -
Csa01g00181 805 PANTHER ALPHA-N-ACETYLGLUCOSAMINIDASE 47 798 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00181 K01205 NAGLU; alpha-N-acetylglucosaminidase [EC:3.2.1.50] - csv:101210507 1609.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00181 Csa-Chr1:1172245 Csa07g01992 Csa-Chr7:19495927 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g686 . . . . Bpe12g00578 . . . . . . . . Car11g00115 Sed08g0166 . Cpe04g01535 Bhi02g00394 Tan09g2200 Cmetu02g0643 . Hepe09g0169 . . Cla06g01635 Cam06g1818 Cec06g1868 Cco06g1874 Clacu06g1776 Cmu06g1718 Cre06g2538 . . . Cone19ag0121 . . . . . . . . . . . Bma08g00184 . . Cmo11g00122 . . . . . . . . . . . . . . . . . . . . Lsi06g01519 Csa01g00181 Chy02g02551 Cme02g01938
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002283 1 4 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00181 Csa_Chr01 FPKM 0.404077 0.0 0.0 0.0 0.0 0.0 1.310254 0.907985 1.390063 0.87117